Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 576 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 417 / 1e-145 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 374 / 2e-128 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 345 / 5e-117 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 339 / 1e-114 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G42250 294 / 4e-97 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 286 / 5e-94 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 280 / 1e-91 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 278 / 6e-91 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 107 / 7e-26 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010506 [exp] 567 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 564 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 561 / 0 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 561 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 396 / 4e-135 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 389 / 2e-133 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004786 [exp] 320 / 4e-107 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 318 / 5e-107 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004785 [exp] 305 / 4e-101 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108601 [exp] 608 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 607 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 605 / 0 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 605 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 598 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 595 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 594 / 0 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 584 / 0 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 415 / 1e-144 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 408 / 4e-142 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10029757 pacid=23152125 polypeptide=Lus10029757 locus=Lus10029757.g ID=Lus10029757.BGIv1.0 annot-version=v1.0 ATGTCGAGCACAGTTGGTCAAGTCATCCGTTGCAAAGCTGCTGTTTCATGGGAGCCAGGGAAGCCACTTGTTATTGAAGAAGTAGAAGTGGCTCCTCCAC AGGCCATGGAGGTCCGCTTGAGGATCCATTTCACTGCTCTCTGCCACACTGATCTCTACTTCTGGGAAGCCAAGGGCCAAACCCCTTTGTTCCCGAGGAT CCTTGGTCATGAAGCAGGAGGGGCGATTAGGATTGTGGAGAGTGTTGGCGAAGGAGTCACAGAGCTGAAGCCAGGTGACCATGTGCTACCTATATTCACC GGAGAATGCAAGGAATGCAGGCACTGTCAGTCTGAAGATAGCAATTTGTGTGAGCTTCTGAGGATCAACACCGATCGAGGAGTGATGATTGGAGATGGAA AATCGAGGTTTTCGATCCGAGGGGAGCCGATTTACCATTTTGTTGGGACATCCACTTTCAGCCAATACACGGTGGTGCATTCTGGATGTGTTGCCAAGAT CAACCCTTCAGCCCCTCTTGACAAAGTTTTCTTCATTAGCTGTGGCTTTTGCACTGGGTTTGGTGCTACTGTAAATGTGGCCAAACCACCAATGGGATCA ACTGTGGCAATTTTTGGACTGGGAGCTATAGGCCTAGCAGCGGTAGAAGGAGCAAGGTTTTCTGGAGCTTCCAGGATCATTGCAAAGAGTTTCGGAGTGA CTGAAACAGTGAATCCAAAGGACCATAACAAGCCAGTTGAAGAGGTGATCATAGAGATGACAAATGGAGGAGCAGATCGATGCATAGAGTGCACAGGCAG TGTTGCTGCCATGATTTCTGCTTTCGAATCTGTCCACGATGGGTGGGGGGTTGCAGTACTTGTTGGTGTTCCAAGCAAGGATGATGAGTTCAAGACACAT CCGATGAACTTCCTTTCCGAGAGAACCCTGAAAGGGACATTCTATGGCAACTTCAAACCCCGGACAGACATTCCTCCCGTCGTCGAGAAGTACATGAACA AGGAAATTGAGCTGGACAAGTTTGTGACGCACTCAGTGCCATTGGCGGAGATCAACAAGGCGTTCGAGCTGATGCTGGCAGGGGAAGGCATTCGATGTCT CATCCGAATGGATGACTAG
AA sequence Show only first row Show all	>Lus10029757 pacid=23152125 polypeptide=Lus10029757 locus=Lus10029757.g ID=Lus10029757.BGIv1.0 annot-version=v1.0 MSSTVGQVIRCKAAVSWEPGKPLVIEEVEVAPPQAMEVRLRIHFTALCHTDLYFWEAKGQTPLFPRILGHEAGGAIRIVESVGEGVTELKPGDHVLPIFT GECKECRHCQSEDSNLCELLRINTDRGVMIGDGKSRFSIRGEPIYHFVGTSTFSQYTVVHSGCVAKINPSAPLDKVFFISCGFCTGFGATVNVAKPPMGS TVAIFGLGAIGLAAVEGARFSGASRIIAKSFGVTETVNPKDHNKPVEEVIIEMTNGGADRCIECTGSVAAMISAFESVHDGWGVAVLVGVPSKDDEFKTH PMNFLSERTLKGTFYGNFKPRTDIPPVVEKYMNKEIELDKFVTHSVPLAEINKAFELMLAGEGIRCLIRMDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	0	1
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	1.4	0.8957
AT4G27290			S-locus lectin protein kinase ...		Lus10037736 [exp]	2.0	0.8555
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	5.1	0.8698
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	5.2	0.8582
					Lus10002111 [exp]	12.0	0.8390
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	12.7	0.8506
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	14.1	0.8123
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	16.2	0.8183
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003208 [exp]	16.3	0.8373
AT4G15130		ATCCT2	phosphorylcholine cytidylyltra...		Lus10000195 [exp]	16.6	0.8292

Compare expression of checked genes

Lus10029757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.