Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027612 [exp] 142 / 2e-35 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002100 [exp] 115 / 4e-28 ND / Lus10033166 [exp] 110 / 2e-26 AT5G39600 207 / 1e-67 unknown protein Lus10025008 [exp] 110 / 2e-25 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023759 [exp] 100 / 4e-24 ND / Lus10032702 [exp] 100 / 1e-23 AT5G56730 135 / 7e-36 Insulinase (Peptidase family M16) protein (.1) Lus10021579 [exp] 94 / 2e-22 ND / Lus10040596 [exp] 94 / 9e-22 ND / Lus10025371 [exp] 94 / 7e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029758 pacid=23151948 polypeptide=Lus10029758 locus=Lus10029758.g ID=Lus10029758.BGIv1.0 annot-version=v1.0 ATGCCTTTAATGGCCAGAAGCAGCTTATGGCTTGTGTCCAAGAGAAATTTTGTTGGTAAAATTCTAAAAATTGGCCACGCAAACCATGTTGAGTGTGGAT CAACTGTGACTCCTGTCGAGAATCTGACAGTGGCAGACGAGAGGTTGTTCACCTTCTATGTAATCTTGGGTTCCCATTTGGTCCCCTCTTCCTACCAGCT TCTTTTTGACCTCTTGGTTGTTATCGTGTACAGTGGGTCCGAGCTCGAGGTCTCGATGTGGTCGGAATTTTTGTCAGGCATTGACCCTGAAACGGTGGTG CTTGATGATATGATCCAACCTATTGTCGTCATTTTCTCTGCATTCACCATTGGCACCTTCTGTGGTAAGGTGACAGCGTCCATTGGTCTTGCAAGTCGGG TGATCCAAGAGCCTCAACATGATGCGATTGATGCTCTTCGCGCTGTGCTCCTCCCAATCACTGCAACCGAACTGGCTACCGCATACCCGACTAAATACGG CCAGCTTCCAGTCCCACTGCAGCTCCTAATAGGTCAGTTTGTTACGCTTGAAGTGCATCTGCCTCGCCAAGCACAAGCAAACGCATATGATGACCGCGTT GTCACCAAGATTTGGGGTTTTGTAGCATCACGTGCACAGCTTCCAACTCCTGCCCCTGCAGGACCTCCAAGGTCACCGAGGTTGACCCCTTCAATTCTAT CTCATTTGGATGGCTGCCAGTTCACTATATTCATCTCTTATTCACATGTCATTTTTTGTTTCCCCCGCAACTCGCCTGTCAACCATGACAAAACTATTCC CCCAAAGTCGGCATATGTACCGCATGTCCAAACTTATGTTGTGTCGCCTCCACCGGATGCAAGTGCTCCTTCCAGCAGCATATCTGAACCCATCTCTACT CTTCCTCCTCTCGTTCCATCTCCGTCTCAAAGGTCATTGGTCCACACTCCAGTTGCAACCGTCATCCCGCATAGGATTCAATCGGCCACCCAGTCAGCTC CGAAACGTGCGGTTCACCCGGTTGAGGAGGCGGCGTTGGAGCGTCTGCCTTCTCAGGATTTTCTGCCTCGGGCTGAAGACCCACTAGGTCCCATTCCTCC TTTGAAGTCTTTAGCTGAATCGCTTCTGGAAGATGACATGCTCCTTGCAGACTTCGTAAGGAACAAACGATCCCGCCAGACACCTGCTCAACAAGCTTCT GTCACTCTACGATCGCCATGCCAACCGTTGGGCTTTGCCATCGGCTTTAACACCGCCGGCATTCAACGCCAACGACCGGTCAATGCCGTCGGCGTGGAGA CCTTAGAAGCGATGTCGGAGGAAGATGATGATTTGTCGCGGTTTATTGATAGTCCTATTTCTGCATCAAATCAAAAATTACTAGAGGAAAAAGCAAAGTT AAAGAAATCTAGGCTCGAGGATGTTGGGCAGTCGAGTGCGCAGTTTCATATTCCCGGACCGATATATGTGGACCCTGATCTGCACTATGCTGGGAGAGAG CTCACGGTTGATGAGATTTTTGCTAACCAACCTTCGGATTTGGGCGATGACATCCATACCATTCGAGATGGGGCGTTTAGGTCATTTCAATTACCGAATT CAAATGTTCGAACAATGTTAGGGCATTTTGCAGTAAATTGTAGGGCGTTGTATAGCAATTCAGATTTGCAAAGCTATGCTGCGCCGCACATTGTGGGTTG CGCGGAGCACCGTAGCGGCTGGTAA
AA sequence Show only first row Show all	>Lus10029758 pacid=23151948 polypeptide=Lus10029758 locus=Lus10029758.g ID=Lus10029758.BGIv1.0 annot-version=v1.0 MPLMARSSLWLVSKRNFVGKILKIGHANHVECGSTVTPVENLTVADERLFTFYVILGSHLVPSSYQLLFDLLVVIVYSGSELEVSMWSEFLSGIDPETVV LDDMIQPIVVIFSAFTIGTFCGKVTASIGLASRVIQEPQHDAIDALRAVLLPITATELATAYPTKYGQLPVPLQLLIGQFVTLEVHLPRQAQANAYDDRV VTKIWGFVASRAQLPTPAPAGPPRSPRLTPSILSHLDGCQFTIFISYSHVIFCFPRNSPVNHDKTIPPKSAYVPHVQTYVVSPPPDASAPSSSISEPIST LPPLVPSPSQRSLVHTPVATVIPHRIQSATQSAPKRAVHPVEEAALERLPSQDFLPRAEDPLGPIPPLKSLAESLLEDDMLLADFVRNKRSRQTPAQQAS VTLRSPCQPLGFAIGFNTAGIQRQRPVNAVGVETLEAMSEEDDDLSRFIDSPISASNQKLLEEKAKLKKSRLEDVGQSSAQFHIPGPIYVDPDLHYAGRE LTVDEIFANQPSDLGDDIHTIRDGAFRSFQLPNSNVRTMLGHFAVNCRALYSNSDLQSYAAPHIVGCAEHRSGW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029758 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	1.0	0.9531
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10029951 [exp]	1.4	0.8803
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	3.0	0.8529
AT1G55790			Domain of unknown function (DU...		Lus10032898 [exp]	3.5	0.8103
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	4.5	0.8251
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	7.1	0.7300
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	7.7	0.8170
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	7.9	0.7801
					Lus10038304 [exp]	8.5	0.7702
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	8.9	0.7760

Compare expression of checked genes

Lus10029758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.