Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 633 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 426 / 4e-149 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 391 / 3e-135 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G32780 359 / 1e-122 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 354 / 2e-120 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 322 / 5e-108 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 316 / 1e-105 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 314 / 1e-104 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 302 / 3e-100 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 124 / 1e-31 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042787 [exp] 737 / 0 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 729 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 726 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 548 / 0 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 409 / 5e-140 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 400 / 8e-138 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004786 [exp] 342 / 6e-116 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 329 / 5e-111 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004785 [exp] 325 / 6e-109 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108601 [exp] 657 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 656 / 0 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 654 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 651 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 649 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 649 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 647 / 0 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 632 / 0 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 429 / 2e-150 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 417 / 2e-145 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10029759 pacid=23152018 polypeptide=Lus10029759 locus=Lus10029759.g ID=Lus10029759.BGIv1.0 annot-version=v1.0 ATGTCTAACACTGCCGGTCAGGTCATCCGCTGCAAAGCTGCAATTGCATGGGAGGCAGGGAAGCCATTAGTGATCCAAGAAGTGGAAGTAGCTCCTCCAC AGGAGAACGAAGTCCGTCTCAAAATCCTCTTCACCTCTCTCTGCCACACCGATGTCTATTTCTGGGAAGCCAAGGGTCAAACCGCAATGTTCCCTCGTAT CTATGGCCACGAAGCTGGAGGGATTGTGGAGAGTGTGGGTCCAGGAGTGACTGATCTAGCTCCAGGGGACAAAGTGCTGCCAGTGTTCACAGGGGAATGT AAAGAATGCCGCCATTGTAAGTCAGAAGAGAGCAATATGTGCGATCTTCTGAGGATCAATACGGATCGTGGTGTGATGCTGACCGATGGAAAGTCGAGGT TCACCGTCGATGGTAAACCGATTTACCATTTCCTTGGGACCTCAACTTTCAGTGAGTACACCGTGTGTCATGTTGGCAGTGTAGCCAAGATCAATCCTGA TGCCCCTCTTGACAAAGTTTGTGTCCTCAGCTGCGGCATTTCTACTGGTCTTGGTGCCACTCTGAACGTTGCTAAGCCGAAGAAGGGTCAGTCAGTTGCT GTCTTTGGGCTTGGAGCCGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGCTGTGTGGGGCATCCAAGATCATTGGAGTTGACTTGAACCCAGCAAGATTCG AGGAAGCCAAGAAGTTCGGTTGCACAGACTTCGTTAACCCAAAAGACCATAAAAAGCCAGTACAAGAGGTGATCGCTGACATGACTGACGGTGGAGTCGA TCGCAGTATTGAATGCACTGGAAGCGTCCAGGCCATGATCTCTGCATTTGAATGTGTCCATGATGGATGGGGAGTGGCTGTACTTGTTGGTGTTCCGAAC AAGGACGACGCATTCAAATCCCACCCAGTGAATTTCCTGAACGAGAGGACACTGAAAGGCACCTTCTTTGGCAACTACAAGCCTCGCAGCGACCTTCCTT CTGTTGTTGAGAAGTACATGTCCAAGGAGCTGGAAGTGGAGAAGTTCATTACTCATTCAGTGCCGTTCTCGGAGATCAACAAGGCGTTTGATTACATGCT GAAAGGAGAGGGGTTGAGGACCATCATTCGGATGGGGGAGTAA
AA sequence Show only first row Show all	>Lus10029759 pacid=23152018 polypeptide=Lus10029759 locus=Lus10029759.g ID=Lus10029759.BGIv1.0 annot-version=v1.0 MSNTAGQVIRCKAAIAWEAGKPLVIQEVEVAPPQENEVRLKILFTSLCHTDVYFWEAKGQTAMFPRIYGHEAGGIVESVGPGVTDLAPGDKVLPVFTGEC KECRHCKSEESNMCDLLRINTDRGVMLTDGKSRFTVDGKPIYHFLGTSTFSEYTVCHVGSVAKINPDAPLDKVCVLSCGISTGLGATLNVAKPKKGQSVA VFGLGAVGLAAAEGARLCGASKIIGVDLNPARFEEAKKFGCTDFVNPKDHKKPVQEVIADMTDGGVDRSIECTGSVQAMISAFECVHDGWGVAVLVGVPN KDDAFKSHPVNFLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHSVPFSEINKAFDYMLKGEGLRTIIRMGE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	0	1
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	1.4	0.9902
AT2G41640			Glycosyltransferase family 61 ...		Lus10031057 [exp]	1.7	0.9857
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10029849 [exp]	2.0	0.9880
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10038515 [exp]	3.0	0.9791
					Lus10002596 [exp]	5.3	0.9844
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	6.7	0.9840
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	8.4	0.9821
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	8.9	0.9811
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	9.8	0.9837
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	11.3	0.9719

Compare expression of checked genes

Lus10029759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.