Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48920 41 / 0.0002 TED7 tracheary element differentiation-related 7 (.1) AT1G43790 40 / 0.0002 TED6 tracheary element differentiation-related 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018925 [exp] 71 / 1e-15 AT1G43790 54 / 4e-10 tracheary element differentiation-related 6 (.1) Lus10028626 [exp] 64 / 2e-12 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108100 [exp] 55 / 4e-09 AT5G48920 74 / 3e-16 tracheary element differentiation-related 7 (.1) Potri.002G072000 [exp] 54 / 5e-09 AT1G43790 47 / 2e-07 tracheary element differentiation-related 6 (.1) Potri.005G060700 [exp] 52 / 4e-08 AT5G48920 73 / 2e-15 tracheary element differentiation-related 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029760 pacid=23152151 polypeptide=Lus10029760 locus=Lus10029760.g ID=Lus10029760.BGIv1.0 annot-version=v1.0 ATGGCCACTCCACTCAGCTTTCCCTTCCCTTACTTCTCCCCTCCGCCGCCAACTCCTCACTTTTTCCACCCACCGCCGCCACCTCCTCACTTCACCCCTC CGCCACCTCACGTCTACCCTCCGCCACCGCACTTGGTCCCTTCGCCGCCACCACCACACGTGCTCCCACCACCACCGCCACACGTGCGCCCACCACCACC ACCGCACGTGCGTCCACCTCCACCATCACCCATCCAGCCGCCTCCATCGCCGTCCCCCGACAACCATCCGACGGTGATCATCATCGTAGTTTTCGCGTCG TTGGGCGGCCTCCTTGGCCTGGTTGGACTGGCTGCGGTCATCTTCTGCTGTCTGAGGAAGATGAAGAAGAAGAAGACAAGCCATGAGATGGATATCGTCC ACATGGACGAGCACGTCAGGGTGAAAGAAGCCATCGTCCCGGGTCCCGACGGGCGTCCTAAGATGATGGTGCTTGAGATCGACGATGACCTGCATTACGA CGTGGTGGGGAAGAAGGATGAAGTTGTTGAGAATGTACATGGCGGAGGGGATCATCCTCGCCACCATCTTCATGACTTGCATGGGAATTCTGCAACGGCG GCGGAGGACGGTGGAAATAGTTCGGCGGCTGTGGTGGCTTCTTCGTCTTCAGGTGATGGGAGGTTGTGA
AA sequence Show only first row Show all	>Lus10029760 pacid=23152151 polypeptide=Lus10029760 locus=Lus10029760.g ID=Lus10029760.BGIv1.0 annot-version=v1.0 MATPLSFPFPYFSPPPPTPHFFHPPPPPPHFTPPPPHVYPPPPHLVPSPPPPHVLPPPPPHVRPPPPPHVRPPPPSPIQPPPSPSPDNHPTVIIIVVFAS LGGLLGLVGLAAVIFCCLRKMKKKKTSHEMDIVHMDEHVRVKEAIVPGPDGRPKMMVLEIDDDLHYDVVGKKDEVVENVHGGGDHPRHHLHDLHGNSATA AEDGGNSSAAVVASSSSGDGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	1.0	0.9876
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	2.4	0.9794
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	3.5	0.9831
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	4.0	0.9843
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	5.2	0.9771
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	6.6	0.9765
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	6.9	0.9763
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	7.2	0.9824
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	8.4	0.9767
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	9.5	0.9804

Compare expression of checked genes

Lus10029760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.