Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48880 441 / 2e-153 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT3G06080 291 / 3e-94 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 290 / 4e-94 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 284 / 2e-91 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G11570 274 / 3e-88 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 266 / 9e-86 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G49340 254 / 3e-80 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G12060 256 / 6e-80 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G20590 254 / 1e-79 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT1G60790 248 / 6e-77 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042789 [exp] 766 / 0 AT1G48880 447 / 7e-156 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Lus10034039 [exp] 290 / 8e-94 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 284 / 1e-91 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 280 / 3e-90 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 279 / 8e-90 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10021328 [exp] 275 / 6e-89 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 274 / 3e-87 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10028025 [exp] 269 / 1e-85 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 266 / 3e-85 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071900 [exp] 566 / 0 AT1G48880 478 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.005G060800 [exp] 459 / 9e-161 AT1G48880 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.002G054400 [exp] 293 / 4e-95 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.002G195800 [exp] 287 / 7e-92 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 280 / 2e-90 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.016G074800 [exp] 273 / 5e-88 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.001G010900 [exp] 271 / 1e-85 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 267 / 2e-83 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 263 / 8e-82 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 258 / 1e-80 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10029761 pacid=23151982 polypeptide=Lus10029761 locus=Lus10029761.g ID=Lus10029761.BGIv1.0 annot-version=v1.0 ATGGTTCATGGTCCGATTGACCACCAACTTACTTCCTTCTGCTACAGGGTTCTCTACGGGTGGAAGGCCATGGTGAAGAGGTTCAAAATGTTCCAGTCAT TTAACGGAGCATTGGCCGTTGCCTCCTCGCTGTCATTTCTTTTAGCTATGGTGTATGCATACTCGTTTCTCTCTCCTAGGGTTGATCTTACTAGCTATGG CGTCCCCCCCATGTCCAATTCTTCATCCACCGACTGCAATTTGTTTGAAGGAAGGTGGATCCGGGACGACAGTTATCCATTGTACAATTCCTCCCTCTGT CCTTTCGCAGAGCGAGGGTTCAATTGCTTGGCGAACGGGAGGAGAGATCAGGGTTATACCCAATTGAGGTGGAGCCCTAATGATTGTGCCATCCCCAAAT TCAACCCCCGCCAGGTGCTTGAGAAGTTGCGTGGCAAACGGATTGTTTTCGTTGGGGATTCGCTGAGTAGAACTCAGTGGGAGTCGTTGGTATGCATTCT CATGACCGGTGTGGATGATAGGAGGGATGTTTATGAAGTTAGTGGGAACCAGATTACTAAAAGAATTAGGTTCTTGGGGATAAGGTTCAGCTCGTTCAAT TTGAGAATTGATTTCTACCGGTCTGTTTTCCTGGTTCAGACTGGTTCTGCTCCCAGACGGGCACCAAAGAGGGTCAAGTCAACCCTGAAGCTTGATAAGA TGGATGATATCAGCAACGAGTGGATTGATTCAGATGTTCTGATCTTCAACTCAGGCCATTGGTGGACGCCTAGTAAGCTTTTTGACATGGGCTGTTATTT CCAAGTAGGTGGATCGTTGAAGCTTGGAATGCCTATAAATACTGGTTTCCAAGTGGCATTAGAGACCTGGGCTACCTGGGCTGCTAGTAATATCAACACC AAGAGAACAAGTGTGTTTTTCCGGACATTCGAATCTTCACACTGGAGTGGCAAGAACTTCGGTTCCTGTACGGTAACCGAGAACCCTTTGACGGAAGCAA GCGGGAAAGACAGGAACGCCATGTCAGACATCATACTAAACGTTGCGAAAAGAGCGCAACTTCATGTCACAGCCTTGCACGTGACACCGATGTGTGCGTA TCGTAGCGATGCCCATGTAGGTACTTGGAGCGACAACCCTTCTGTACCGGATTGCAGTCACTGGTGCCTACCTGGAGTGCCTGATTCGTGGAATGAACTT CTCTTGTCCTACATTTTGTCTAACAGTCACTGA
AA sequence Show only first row Show all	>Lus10029761 pacid=23151982 polypeptide=Lus10029761 locus=Lus10029761.g ID=Lus10029761.BGIv1.0 annot-version=v1.0 MVHGPIDHQLTSFCYRVLYGWKAMVKRFKMFQSFNGALAVASSLSFLLAMVYAYSFLSPRVDLTSYGVPPMSNSSSTDCNLFEGRWIRDDSYPLYNSSLC PFAERGFNCLANGRRDQGYTQLRWSPNDCAIPKFNPRQVLEKLRGKRIVFVGDSLSRTQWESLVCILMTGVDDRRDVYEVSGNQITKRIRFLGIRFSSFN LRIDFYRSVFLVQTGSAPRRAPKRVKSTLKLDKMDDISNEWIDSDVLIFNSGHWWTPSKLFDMGCYFQVGGSLKLGMPINTGFQVALETWATWAASNINT KRTSVFFRTFESSHWSGKNFGSCTVTENPLTEASGKDRNAMSDIILNVAKRAQLHVTALHVTPMCAYRSDAHVGTWSDNPSVPDCSHWCLPGVPDSWNEL LLSYILSNSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	5.2	0.8582
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034194 [exp]	5.5	0.8364
AT1G29290			unknown protein		Lus10007309 [exp]	6.2	0.8878
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	6.9	0.8737
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	9.5	0.8668
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10042789 [exp]	14.1	0.8775
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	15.6	0.8395
					Lus10009048 [exp]	15.7	0.8349
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	19.5	0.8427
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006334 [exp]	23.0	0.8643

Compare expression of checked genes

Lus10029761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.