Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78780 228 / 2e-75 pathogenesis-related family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018919 [exp] 283 / 3e-97 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4) Lus10037316 [exp] 218 / 5e-71 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4) Lus10039018 [exp] 199 / 7e-64 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4) Lus10042792 [exp] 183 / 3e-59 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4) Lus10035732 [exp] 139 / 5e-41 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4) Lus10027315 [exp] 104 / 3e-28 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4) Lus10028620 [exp] 57 / 1e-10 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188400 [exp] 338 / 6e-119 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4) Potri.005G188300 [exp] 335 / 2e-117 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4) Potri.001G389800 [exp] 241 / 2e-80 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4) Potri.011G108900 [exp] 241 / 3e-80 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4) Potri.001G389400 [exp] 235 / 6e-78 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029763 pacid=23152146 polypeptide=Lus10029763 locus=Lus10029763.g ID=Lus10029763.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCAAGCAATAAGTACAGAGATTTCTTGTACGGGGAAGGAGAGAAGAACACTGTGTGGAGGTTTGGTGCTCCTCCGAGCTATGATGTCGTCG ACAAGCTCTTCGAAGATGGCAGAACCAAGGAATGGCCTTCAGGTTCCCTAGAAGAAAAAGTGCAGAACTTGGTGAAGACTTATGAGATGGAGATGATGCA CAAGCTTAATCCAGCTGATTATAAGTCAATGGATCCCAAAAGGATGAGTTTCAGTGTTAACGGGAGGAAACCAACCAACCTGGAAGAAACAGGAAAGTTA GGAGGGAGCTACAATTTCTTCCTCCAGACGTCGCTGCCTGTCGAGATGAGGGGTTACAACCCTGCAGAGGAAACAGCAGAGACATCTCATTCAACTTTCA CTACTGTTTTCCCTCGCGGGTTTGCATTGGAGATTCTGCAGGTCTACTCGGGTCCTCCCATGATTGCGTTCAAGTTCAGGCACTGGGGATTTATGGAGGG TCCGTATAAAGGTCGGCCTCCCACTAGGAAAATGATTCAATTCTTTGGAATGGCTGTTTTTGAGGTTGATGAAGACATGAAGATTATCAAGGTGGAGTTC TTCATGGATCGTGGCGAACTGCTTGCCGGTATCTTGGATGGTGCCGGGTTGAGCAGTTCGGAAGTTGCAGCAGAAGGTTCCAAGTGCCCTGTCATGAAAG GCACTGGATAG
AA sequence Show only first row Show all	>Lus10029763 pacid=23152146 polypeptide=Lus10029763 locus=Lus10029763.g ID=Lus10029763.BGIv1.0 annot-version=v1.0 MAVSSNKYRDFLYGEGEKNTVWRFGAPPSYDVVDKLFEDGRTKEWPSGSLEEKVQNLVKTYEMEMMHKLNPADYKSMDPKRMSFSVNGRKPTNLEETGKL GGSYNFFLQTSLPVEMRGYNPAEETAETSHSTFTTVFPRGFALEILQVYSGPPMIAFKFRHWGFMEGPYKGRPPTRKMIQFFGMAVFEVDEDMKIIKVEF FMDRGELLAGILDGAGLSSSEVAAEGSKCPVMKGTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	0	1
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	1.7	0.9905
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	2.0	0.9907
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	2.2	0.9910
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	3.2	0.9851
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	3.9	0.9885
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	4.0	0.9890
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	4.0	0.9865
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	6.0	0.9855
					Lus10027919 [exp]	6.2	0.9810
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	8.8	0.9881

Compare expression of checked genes

Lus10029763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.