Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21370 464 / 3e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042793 [exp] 587 / 0 AT1G21370 486 / 2e-170 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071300 [exp] 506 / 0 AT1G21370 485 / 1e-173 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02698 [flax] [poplar] DUF218 DUF218 domain
Representative CDS sequence Show only first row Show all	>Lus10029764 pacid=23152029 polypeptide=Lus10029764 locus=Lus10029764.g ID=Lus10029764.BGIv1.0 annot-version=v1.0 ATGAACATATATGCAAACAATTCCAAGTCTTTCAATGCATACTCAAAGAGCGACTTCGATTTAGAATCAGCAACTGTGAAAAGGCCCCGCAAGTCTAAGA ATTCATCGCCTCCTTCTCCTCTCAGGATGTTCAAGTCGTTAGGAAATCGTCTCCAGTACTATTACAAACTCCATCCTCTGCTAGTGATCTTCATTTCCTT ATCCTTTGGTGTATCAGTGCTCCTCATTTTTTCGGTCTATGAGAACCATTACCGGTCATCATCCATGAGTTTTTACCAACAAAGTTCTGAGATTGGAGTA CTGAAGGATAATCCATATGGCAATCTTAAGAATCTTGTGATGGTTGCTGGCCATTCAATTTATACGAGCAGTAGCTGTGGCGGTGCAGATAAGGAGGATT CCTGGTTTTTGGAACCTTACCAGAAGCATCCAGGGCAAGCTGCTACTTTTGTGGCTCACATACAAGAAGGTGTTGAGAATGTGGCGAAGGATAAAGAAGC TTTGCTTTTGTTCAGTGGTGGTGAAACCAGGAAAGATGCAGGTCCGAGGAGTGAAGCGCAGAGTTATTGGGCTGTTGCTGAATCTAAAGGATGGTTTGGT AATGGAGACGATGTGAAGTTGAGGACATTGACTGAAGAACATGCAAGAGACAGCTTTGAAAATCTCCTCTTCAGTGTATGCCGGTTCAGAGAGGTTACTG GCGCATATCCCCAAAACATAACGGTTGTAAGTTATGATTTCAAGGAGGAAAGATTCGCTCAACTGCATCGCTCAGCACTTCGCTTCCCGGAGTCGAGATT CTTTTACTCTGGCACCCCTGCATCGCCAACCTCGAAAGCAGCAGCTTTGAAAGGTGAAGCACTCGTGCGGTCTCAATTTCAACATGATCTCTACGGGTGT AGTGGTTCACTGTGGCGTAAAAAGCTCGGCCGTGATCCCTTCCATCGGTCAATCCCGTACCCTAACGGCTGTCCAGAAATCGAAGGTCTATTCAGATACT GTGGAGAAACTCTTTATCCAGGTTCTCTTCCGTGGGCTGTAAGCCATAATTAA
AA sequence Show only first row Show all	>Lus10029764 pacid=23152029 polypeptide=Lus10029764 locus=Lus10029764.g ID=Lus10029764.BGIv1.0 annot-version=v1.0 MNIYANNSKSFNAYSKSDFDLESATVKRPRKSKNSSPPSPLRMFKSLGNRLQYYYKLHPLLVIFISLSFGVSVLLIFSVYENHYRSSSMSFYQQSSEIGV LKDNPYGNLKNLVMVAGHSIYTSSSCGGADKEDSWFLEPYQKHPGQAATFVAHIQEGVENVAKDKEALLLFSGGETRKDAGPRSEAQSYWAVAESKGWFG NGDDVKLRTLTEEHARDSFENLLFSVCRFREVTGAYPQNITVVSYDFKEERFAQLHRSALRFPESRFFYSGTPASPTSKAAALKGEALVRSQFQHDLYGC SGSLWRKKLGRDPFHRSIPYPNGCPEIEGLFRYCGETLYPGSLPWAVSHN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21370			unknown protein		Lus10029764 [exp]	0	1
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	2.0	0.9219
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	2.0	0.9553
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	2.8	0.9266
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	5.5	0.9231
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	5.8	0.8966
AT1G69430			unknown protein		Lus10036796 [exp]	6.0	0.9053
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	6.3	0.9104
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	6.5	0.9092
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	7.5	0.8935
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	7.7	0.8973

Compare expression of checked genes

Lus10029764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.