Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21260 212 / 8e-70 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT1G21360 203 / 1e-66 GLTP2 glycolipid transfer protein 2 (.1) AT2G33470 118 / 1e-33 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT2G34690 41 / 0.0002 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042793 [exp] 350 / 2e-119 AT1G21370 486 / 2e-170 unknown protein Lus10018917 [exp] 278 / 6e-96 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 260 / 8e-89 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10011806 [exp] 124 / 2e-35 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10021169 [exp] 123 / 3e-35 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 119 / 4e-33 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 82 / 3e-19 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071100 [exp] 251 / 2e-85 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1) Potri.005G188600 [exp] 250 / 5e-85 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.010G069600 [exp] 129 / 8e-38 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 123 / 3e-35 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 112 / 3e-31 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.006G051800 [exp] 44 / 2e-05 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10029765 pacid=23151942 polypeptide=Lus10029765 locus=Lus10029765.g ID=Lus10029765.BGIv1.0 annot-version=v1.0 ATGAACATCGATGGCAGTCCTGCTGCAACAACAATACCCACAAGGCCTTTCCTAAACATCTGCAGCTTGCTCATTCTGCAGATTCTTGATAAGATAGGCC CAACAATGGCTGTTCTTAGGCAAGACATTAATCAGAATATCCAGAGATTGGAGGGGAAATGTGATGGTGATCCATTACTGGACTCAAACATGGTTGAAAT TCTGAAGAAAGAAGCAAGTGATGGCAACTCCAGAAAGAGACACAGTTGTAGCAAAGCCTTTCTATGGCTTACAAGATCATTGGATTTTACAACTAGTTTG TTACAAAAGCTGGCAAAAGATCCAGGACAGGAGATGGAGAAAGCAGTGGAAGAGAGTTACAACAGCAGCCTGAAACCCTGGCATGGATGGATTTCTTCAG CTGCATTCAAAGTGGCTCTCAAACTCGTGCCAGACAACAAAACGTTCATCAGCCTTCTGCAGACGAAAGACGACGAGAACAATATCGACATGTTAAAAGA TGATATGCAGGCATTAATCTCATTACTTGCTCCTCTTCTTCAAGACATCCATGCTACTCTGGTGAGCTTATAA
AA sequence Show only first row Show all	>Lus10029765 pacid=23151942 polypeptide=Lus10029765 locus=Lus10029765.g ID=Lus10029765.BGIv1.0 annot-version=v1.0 MNIDGSPAATTIPTRPFLNICSLLILQILDKIGPTMAVLRQDINQNIQRLEGKCDGDPLLDSNMVEILKKEASDGNSRKRHSCSKAFLWLTRSLDFTTSL LQKLAKDPGQEMEKAVEESYNSSLKPWHGWISSAAFKVALKLVPDNKTFISLLQTKDDENNIDMLKDDMQALISLLAPLLQDIHATLVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	0	1
					Lus10022017 [exp]	3.7	0.9318
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	4.0	0.9404
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	7.3	0.9318
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	9.4	0.9279
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	9.8	0.9219
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	10.6	0.9226
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10014274 [exp]	11.1	0.8755
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	12.0	0.9206
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	13.8	0.9244
AT1G30140			unknown protein		Lus10024751 [exp]	13.9	0.9244

Compare expression of checked genes

Lus10029765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.