Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 631 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71890 595 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G71880 590 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G14670 565 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT1G66570 563 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT5G43610 557 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT5G06170 547 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 440 / 6e-150 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 410 / 4e-137 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028616 [exp] 682 / 0 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 676 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 671 / 0 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 669 / 0 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 637 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 538 / 0 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10014821 [exp] 486 / 2e-169 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 451 / 3e-156 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 448 / 3e-153 AT1G09960 694 / 0.0 sucrose transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 665 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 655 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 436 / 1e-148 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 219 / 6e-64 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 219 / 7e-64 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029766 pacid=23152060 polypeptide=Lus10029766 locus=Lus10029766.g ID=Lus10029766.BGIv1.0 annot-version=v1.0 ATGAAAGAATTCAATATCGAATCAAAACACACCACTTTGCAACCGCCGCCGGAGGCGGCTCTACCAAATGCCAAAAAGCCCTCCGCACTACACGCATACA GAGAAATCATCCTCGTAGCCTCGATCGCGATCGGTCTCCAATTCGGGTGGGCCCTACAGCTCTCTCTCCTCACTCCTTACGTCCAGCTTCTCGGTATCCC CCACGCCTACGCCGCCTTGATCTGGCTGTGTGGTCCAATCTCCGGCATGCTTGTCCAGCCCCTTGTCGGCTACTACAGCGACCACAGCACCTCCCGCTTT GGCCGCCGCCGCCCTTTCATCGCCGGCGGCACCGTCTTCGTTCTCTTCGCCGTCTTCCTCATCGGCTACGCCGCAGACATCGGCCATGCCTCCGGCGACA GCCTCTCCAAGCCCGCTAAGCCGCGCGCCATCGCCGTCTTCGTGGTCGGCTTCTGGATCCTCGATGTTGCTAATAACATGCTGATGGGCCCATGTCGCGC CCTCTTGGCCGACTTATCCGGGACCAATCAGAAAAAGACACGTATCGCCAACTCCTTCTTCTCTTTCTTCCTCGCCGTCGGAAATGTCCTTGGTTACGCC GCTGGGTCCTACAGCAAGATTTACAGAGTCTTCCCTTTCACTAAGTCTGAAGCTTGCGACGTCTACTGCGCGAATTTGAAGTCGTGTTTCTTCATCTCCA TCGCCTTGCTCATCGCTTTCTCCTCCATCGCTCTCTATTTTGTCACTGAACGACCGTTCTCGCCGGAGGCACACTCCGACTCCGACGATGATAATGATGA TGAACAGTCTGAATTGAACTCGAATAAGGTGGCGTCGTCGGGTCCGGCGCCCACGACGTTGTGCTGCTCCGGTGTGCCGTTCTTCGGGGATTTGTTCGTT GCTGTGAGAAGCATGAAAAGGCCGATGATCGTCCTCTTGATGGTGACGTGTCTGAACTGGGTCGGGTGGTTCCCGTTCTTCCTCTACGACACCGACTGGA TGGGTAGGGAAGTGTACGGCGGTGAGTCGACCGGCGGGACTGACGACCAGAAGCTGAAGGCTTACGCGCATGGCGTCCGGGCTGGATCTTTGGGGCTGAT GCTGAACGCCGTTGTTCTCGGGTTCACTTCGCTGGGAGTTGAGGCTTTGGGACAGTGGGTCGGCGGCATAAAGCGGTTGTGGGGGATTGTGAATTTCATC CTCGCGATCTGCTTGGCTATGACAGCATTGGTAAGCAAATTGGCCGATTCCACCAGACAATTTGACGGCAACGGTGGACCTCTGCCACCGCCTGCCGGAG TTCAAGCGGGAGCGCTGATCCTCTTTGCTGTTTTAGGCATTCCTCTGGCGGTAACTTTTACTGTTCCTTGTGCCTTGACGTCAATATTCTCGAATGAAGC TGGTGCCGGTCAAGGGCTTTCATTGGGAATTCTCAATCTCTCCGTCGTCATCCCACAGATGATCGTGTCACTACTAAGTGGACCGTGGGATTCAATATTT GGGGGAGGGAACTTGCCGGCGTTTATGGTCGGAGCAGTAGCGGCAGCCTGCAGCGGCATCTTAGCACTAACCGTACTCCCTTCTCCTCCTCCTGAAGCTG CTGCCAAGGTGTCCGTCGGAGCCTTCCACTAA
AA sequence Show only first row Show all	>Lus10029766 pacid=23152060 polypeptide=Lus10029766 locus=Lus10029766.g ID=Lus10029766.BGIv1.0 annot-version=v1.0 MKEFNIESKHTTLQPPPEAALPNAKKPSALHAYREIILVASIAIGLQFGWALQLSLLTPYVQLLGIPHAYAALIWLCGPISGMLVQPLVGYYSDHSTSRF GRRRPFIAGGTVFVLFAVFLIGYAADIGHASGDSLSKPAKPRAIAVFVVGFWILDVANNMLMGPCRALLADLSGTNQKKTRIANSFFSFFLAVGNVLGYA AGSYSKIYRVFPFTKSEACDVYCANLKSCFFISIALLIAFSSIALYFVTERPFSPEAHSDSDDDNDDEQSELNSNKVASSGPAPTTLCCSGVPFFGDLFV AVRSMKRPMIVLLMVTCLNWVGWFPFFLYDTDWMGREVYGGESTGGTDDQKLKAYAHGVRAGSLGLMLNAVVLGFTSLGVEALGQWVGGIKRLWGIVNFI LAICLAMTALVSKLADSTRQFDGNGGPLPPPAGVQAGALILFAVLGIPLAVTFTVPCALTSIFSNEAGAGQGLSLGILNLSVVIPQMIVSLLSGPWDSIF GGGNLPAFMVGAVAAACSGILALTVLPSPPPEAAAKVSVGAFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10029766 [exp]	0	1
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	13.1	0.8127
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	13.5	0.7267
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	17.7	0.7696
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	19.0	0.7726
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	23.3	0.7463
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	26.8	0.7551
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	43.4	0.7207
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10043437 [exp]	44.2	0.7229
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	55.9	0.7009
AT2G28780			unknown protein		Lus10040846 [exp]	59.5	0.7237

Compare expression of checked genes

Lus10029766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.