Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52440 113 / 3e-30 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT1G21340 105 / 4e-27 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT2G46590 103 / 2e-25 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT2G28510 102 / 2e-25 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 100 / 5e-25 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G61850 100 / 7e-25 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT4G24060 100 / 1e-24 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT4G00940 99 / 2e-24 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 100 / 3e-24 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT3G45610 97 / 5e-24 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028611 [exp] 158 / 2e-47 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10013586 [exp] 102 / 1e-25 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 102 / 5e-25 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10012619 [exp] 101 / 8e-25 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10035504 [exp] 97 / 9e-25 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10042114 [exp] 96 / 1e-24 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10027797 [exp] 97 / 3e-24 AT1G51700 125 / 2e-36 DOF zinc finger protein 1 (.1) Lus10017313 [exp] 99 / 4e-24 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 99 / 5e-24 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188900 [exp] 135 / 5e-38 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G070700 [exp] 128 / 3e-35 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G202500 [exp] 112 / 2e-29 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 110 / 9e-29 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 104 / 2e-26 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.014G100900 [exp] 102 / 8e-26 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.003G144500 [exp] 102 / 1e-25 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 102 / 2e-25 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 100 / 5e-25 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 100 / 8e-25 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10029767 pacid=23152144 polypeptide=Lus10029767 locus=Lus10029767.g ID=Lus10029767.BGIv1.0 annot-version=v1.0 ATGATGGCTGCTGATGACCAATTCATCCTACCCCCAAGAATAATCGACACTACTACTACTACTGCTCAATGTCAATGGAAACCTCACCTTCAGATCGCCC CCAATTGCCCACGTTGCGCTTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCCCAGCCCCGCTACTTCTGTAAATCCTGCCGCCGCTA CTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGTGGCGGATGCCGCCGCACCCGCCGCTCCAAATCCTCCCGCTCCTCCCGCGGTCCTCCTCCT CCTCCCACTGACGCTCAAAACACCACCAGCAGTGGCGGCGGGGGCGATTCCTCCACCTCCTCCTCCGATATCGACATGGCCGTCGTTTTCGCCAAATTTC TCAACCCTGCTGCCGACGGAGTCACGAATTCGAATTCTGCGTCGTCCACCCCCGAGAGCGGGCAGATCAGCGAAGATCACGACGGGATTGTTTTTCCGTT GGGCGGGAATCTTGCTGATCCGTACGAATTCACGGATCTGTTTCGAGAGGAAGGGTTTCTGGAGGGCGATGATCAAATAAACCAGGAGGAGAGTATGATT GATGCGCTTGGGTTGCAGACATTGTTGAGCGACGAAATGGCGCAGTTGGAGGCGGCTCTATGGACGACGTCGACAGCGATGGATCCTGGATTGCCGGCGG CGTCGGCGGCGTGGGAGGCGCTGGAGCAGAGTGGGTTTGATGCTTCAGGGGATATGAACAATTGGGGTTGTTACGATTTGCAGCTCCAGGGCAATTTCGA CAATTTCCCTGGACACTAG
AA sequence Show only first row Show all	>Lus10029767 pacid=23152144 polypeptide=Lus10029767 locus=Lus10029767.g ID=Lus10029767.BGIv1.0 annot-version=v1.0 MMAADDQFILPPRIIDTTTTTAQCQWKPHLQIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRRTRRSKSSRSSRGPPP PPTDAQNTTSSGGGGDSSTSSSDIDMAVVFAKFLNPAADGVTNSNSASSTPESGQISEDHDGIVFPLGGNLADPYEFTDLFREEGFLEGDDQINQEESMI DALGLQTLLSDEMAQLEAALWTTSTAMDPGLPAASAAWEALEQSGFDASGDMNNWGCYDLQLQGNFDNFPGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	0	1
AT4G23020			unknown protein		Lus10006336 [exp]	1.4	0.8732
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	1.7	0.8748
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	3.7	0.8085
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	6.2	0.8009
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	6.5	0.7993
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	7.2	0.8569
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	8.1	0.8095
AT3G14760			unknown protein		Lus10042496 [exp]	9.5	0.7866
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	9.8	0.8019
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	12.2	0.8661

Compare expression of checked genes

Lus10029767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.