Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21326 68 / 5e-14 VQ motif-containing protein (.1) AT1G21320 63 / 1e-11 nucleotide binding;nucleic acid binding (.1.2) AT3G18690 59 / 6e-11 MKS1 MAP kinase substrate 1 (.1) AT1G68450 58 / 7e-11 PDE337 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) AT3G18360 56 / 1e-09 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042794 [exp] 145 / 1e-44 AT1G21326 74 / 9e-17 VQ motif-containing protein (.1) Lus10037918 [exp] 72 / 1e-16 ND / Lus10028604 [exp] 62 / 1e-11 ND / Lus10009033 [exp] 60 / 6e-11 AT3G18360 110 / 5e-29 VQ motif-containing protein (.1) Lus10012286 [exp] 43 / 5e-06 AT1G21326 50 / 8e-09 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189300 [exp] 120 / 7e-34 AT1G21326 75 / 4e-16 VQ motif-containing protein (.1) Potri.002G070600 [exp] 116 / 3e-32 AT1G21326 76 / 3e-16 VQ motif-containing protein (.1) Potri.005G057800 [exp] 80 / 1e-18 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1) Potri.007G110100 [exp] 62 / 5e-12 AT3G18690 119 / 3e-33 MAP kinase substrate 1 (.1) Potri.012G055900 [exp] 59 / 7e-11 AT3G18360 73 / 2e-15 VQ motif-containing protein (.1) Potri.015G046600 [exp] 59 / 9e-11 AT3G18360 81 / 2e-18 VQ motif-containing protein (.1) Potri.006G199300 [exp] 54 / 1e-09 AT1G68450 60 / 1e-12 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.010G123700 [exp] 49 / 2e-07 AT1G68450 64 / 9e-13 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10029768 pacid=23152037 polypeptide=Lus10029768 locus=Lus10029768.g ID=Lus10029768.BGIv1.0 annot-version=v1.0 ATGGATTCGTCATCATCTGACTCCAGATCACCCAGGAAAGAGCTTCAAGGTCCCCGCCCTCCTGCTCTCAAAGTCCGCAAAGATTCCCACCAAATCAGAA AACCTCCCGTCGCTCCCAGACCCAACCCCAACCTAATTAACCCACCCATCCACCATCAATTGAATCAGCAGCCGCGCGCTCCGGTCATCATCTACACCGT TTCCCCTAAAGTGATTCACACAAACCCCGACGATTTCATGACCCTAGTTCAACGCCTCACCGGCTCTTCTACTTCTTCTTCTTCCTCAGCCGCCTCCTCC TCCAACCCTTTTAGCGATGACGGCGCGCCGTCCCCGGCCGCCAGGTACGCCGCGATTGAGAAGACCAGATCGCCCAAGGGGAATTCGATGGTTCAGCAGC AGAGTGGGAACTTGGATTTTGGGGATTTCTTCGTCCAAGGGGTGGAGATGGGTCCGTTTACAGGGATTGGGTTTCCGCAGCAGGGGATACTGTCGCCTGG ACCGGCGTTATTGCCGCCGGGGCCGCCCGGGCTCTCTGTTCAACAATTTCAACTCCGGCAACTTTGA
AA sequence Show only first row Show all	>Lus10029768 pacid=23152037 polypeptide=Lus10029768 locus=Lus10029768.g ID=Lus10029768.BGIv1.0 annot-version=v1.0 MDSSSSDSRSPRKELQGPRPPALKVRKDSHQIRKPPVAPRPNPNLINPPIHHQLNQQPRAPVIIYTVSPKVIHTNPDDFMTLVQRLTGSSTSSSSSAASS SNPFSDDGAPSPAARYAAIEKTRSPKGNSMVQQQSGNLDFGDFFVQGVEMGPFTGIGFPQQGILSPGPALLPPGPPGLSVQQFQLRQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21326			VQ motif-containing protein (....		Lus10029768 [exp]	0	1
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	13.6	0.9197
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	23.2	0.9165
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	24.4	0.9126
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	27.1	0.8981
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	28.1	0.9188
AT4G39720			VQ motif-containing protein (....		Lus10016814 [exp]	35.9	0.9062
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Lus10001805 [exp]	51.0	0.9103
AT3G15518			unknown protein		Lus10043096 [exp]	54.6	0.9076
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	79.9	0.9017
AT2G18210			unknown protein		Lus10041771 [exp]	87.6	0.8996

Compare expression of checked genes

Lus10029768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.