Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42120 587 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 304 / 5e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 297 / 1e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 286 / 2e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 285 / 3e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 270 / 8e-81 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 269 / 3e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 269 / 4e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60270 261 / 1e-77 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 260 / 1e-76 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042795 [exp] 1168 / 0 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 394 / 2e-119 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 348 / 3e-110 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 322 / 5e-100 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10019923 [exp] 310 / 8e-95 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 295 / 1e-89 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 289 / 8e-88 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 287 / 4e-87 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 277 / 4e-87 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189500 [exp] 717 / 0 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 415 / 5e-136 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 402 / 3e-130 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 332 / 6e-104 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 323 / 4e-100 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 323 / 4e-100 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 312 / 4e-96 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 311 / 4e-96 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 311 / 4e-96 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 310 / 5e-96 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10029769 pacid=23151955 polypeptide=Lus10029769 locus=Lus10029769.g ID=Lus10029769.BGIv1.0 annot-version=v1.0 ATGCATTATTCGATCTTTCTTATTTTTCTCTTCTTCTTCTTCTGCATCTCCACAAATTCCCTCCCTCCACCTTCCCACAACCTCACCTTCTACGGCGACG CCCATTTCCGAAACGACGGCATATCCCTCACTCAAGACCACCCTTGCCATTCCTCCTCTTCCACGTTCGGCAGAGCACTCTACTTCCGCCCCTTCCGCTT CCTCGACCCCAAGACCAACTCCACCGCTTCTTTCTCTTCCCGCTTCATCTTCTCCATCATCCAATCCCCTCTCTGCCCTCCCGCCGATGGCCTCGCCTTC TTGATCACCTCCAGCCCTGACTCCTTCAGCCTCTCCGACGGCTTCATGGGCCTCCCCGGTCCCGCCCTAAACCCTAGAGACTCCTTCGTCGCCGTCGAAT TCGACACCAATTACGACTCCTCCCTTCAAGACCCCGCCCACGGAGGCGACCACGTCGGAGTCGACGTCAACACGATCGTCTCCTCCGCCGTGACTTCCGT CTCCGGTTCTGTCGATCTAAAAAGCGGCAAGGAAATCACGGCGTGGATTGACTACTCCGATTCCTCGAAATCGGTTCAGGTCTGGCTGAGTTACTCGCAG AGCCGCCCTACCAATCCGATCCTTGTAGCTAAAGTCGACTTATCCGATCATTTCAAGGAGTTCATGTTCGTAGGGTTTTCTGCATCCAATGGACAAGGAT CGGCCGTTCAATTCGTCACCCATTGGCGCTTCAATACTTATGGCTATCCTTCTTTCAATTCTTCCATGGCATCCATTGACGAAGGTAACTGTGTCGTTTG CTTCCCTACTGATGATGACCATGATCATGAACAGAACAATAGCAGCCATGGTGGTAGAAACAGAGGAAAGAATTTAGCTCTAGGGATTGGAGGGTTAGCT GCATTGGTTGTTTCCATGATCTTGATTCTCATTGTTAGTGTCAGATGTCTGCTTAGGAGAAGGCTGCAATGGAGTTTAAGTACAAGACGAAGAACATTAG TTAATTCAGTTCCATCAAAGATGTCAATTTGGGAGATAAAATCAGCTACAATGGGGTTTAGTAGAGCCAGAATCGTTGGTGAAGGTGCTTCAGCTACTGT ATATAAAGGATCGCTTCCTGGATCTAGTGCTGCAGTTGCAATCAAGAGATTCAATAGAGCCGGAATCGACTGCACTCGCAACAACCCGTTTGTGACCGAG TTTGCTACAATGGCGGGGTGTTTGAAGCACAAGAACTTGGTTCAGCTTCGAGGATGGTGTTGTGAAGGACCTGAGCTGGTTCTGGTTTACGAGTACTTCC CTAATGGCAGCCTTGACAGGATCCTTCACAAAAATGGAGGTTCAGTTGTCCTGACATGGAAGCAAAGGCTGAACATACTTTCCGGTGTCGCTTCGGCTCT TTCTTACTTACACGAGGAATGCGAGAGGCAGATCATTCACAGGGATGTCAAGGCTTGCAATATCCTGCTCGACTCGGAATTCAACGCCAAGCTCGGAGAT TTCGGCCTCGCTGAAGTTTACGAGCACGAGCATTCCTCTCTCACAAGGGATGCCACGATACCTGCCGGAACAATGGGATATCTTGCTCCGGAATATGTCT ACTGTGGCGTTCCGACTCAGAAGAGTGACGTTTACAGCTTTGGGGTGGTGGTTCTGGAAGTGGCAACCGGGCGTAGGCCGGTAGAAGGAGGTGGCGGAGG AGGGATGGTGTTGGTGGATTGGGTGTGGGGTTGTTGGGAGAGAGGGAAGCTGATCGAGGTTGCAGATCCGAAGCTGAATGGAGAGTATAGTGTTGGGGAA ATGGAGAGGGTGCTGATAGTTGGAGTTGCTTGTGTTCATCCGAATCCTGAGAAGAGGCCCAGTGTTAAAGAGGCTGGTAGGATTCTGAAAGGGGAAGCTC TGTTGCCTGCTTTGCCGGCGAGGAAGCCGAAAGTTGGGTTTCAGTATGGTGTTGCGGCGGAGGAGGGTGCTGGTGCTGGTGCTGTTGCTAACGCGGTGGT TGTGAGTCGAGAAGGAGATCAGAGCCCTGGAACTGATGACATGTCGTGGATGTCTCCTATGAGCCATTTTGGATTGAGTAAGGACGTCCATGATTGA
AA sequence Show only first row Show all	>Lus10029769 pacid=23151955 polypeptide=Lus10029769 locus=Lus10029769.g ID=Lus10029769.BGIv1.0 annot-version=v1.0 MHYSIFLIFLFFFFCISTNSLPPPSHNLTFYGDAHFRNDGISLTQDHPCHSSSSTFGRALYFRPFRFLDPKTNSTASFSSRFIFSIIQSPLCPPADGLAF LITSSPDSFSLSDGFMGLPGPALNPRDSFVAVEFDTNYDSSLQDPAHGGDHVGVDVNTIVSSAVTSVSGSVDLKSGKEITAWIDYSDSSKSVQVWLSYSQ SRPTNPILVAKVDLSDHFKEFMFVGFSASNGQGSAVQFVTHWRFNTYGYPSFNSSMASIDEGNCVVCFPTDDDHDHEQNNSSHGGRNRGKNLALGIGGLA ALVVSMILILIVSVRCLLRRRLQWSLSTRRRTLVNSVPSKMSIWEIKSATMGFSRARIVGEGASATVYKGSLPGSSAAVAIKRFNRAGIDCTRNNPFVTE FATMAGCLKHKNLVQLRGWCCEGPELVLVYEYFPNGSLDRILHKNGGSVVLTWKQRLNILSGVASALSYLHEECERQIIHRDVKACNILLDSEFNAKLGD FGLAEVYEHEHSSLTRDATIPAGTMGYLAPEYVYCGVPTQKSDVYSFGVVVLEVATGRRPVEGGGGGGMVLVDWVWGCWERGKLIEVADPKLNGEYSVGE MERVLIVGVACVHPNPEKRPSVKEAGRILKGEALLPALPARKPKVGFQYGVAAEEGAGAGAVANAVVVSREGDQSPGTDDMSWMSPMSHFGLSKDVHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	0	1
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	6.7	0.8870
AT5G14990			unknown protein		Lus10036529 [exp]	8.1	0.8553
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10025654 [exp]	10.4	0.8491
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	11.5	0.8707
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	13.4	0.8305
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	15.2	0.7733
AT3G46140			Protein kinase superfamily pro...		Lus10029018 [exp]	16.4	0.8601
					Lus10013654 [exp]	16.7	0.8687
AT4G38380			MATE efflux family protein (.1...		Lus10026829 [exp]	17.0	0.8327
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	17.2	0.8497

Compare expression of checked genes

Lus10029769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.