Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42130 451 / 2e-158 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT1G34065 123 / 6e-32 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 126 / 2e-31 Mitochondrial substrate carrier family protein (.1) AT4G39460 119 / 1e-30 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G35800 100 / 2e-22 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT1G74240 92 / 1e-20 Mitochondrial substrate carrier family protein (.1) AT5G15640 88 / 3e-19 Mitochondrial substrate carrier family protein (.1) AT2G26360 88 / 5e-19 Mitochondrial substrate carrier family protein (.1) AT1G07030 85 / 3e-18 Mitochondrial substrate carrier family protein (.1) AT2G33820 84 / 8e-18 ATMBAC1 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042796 [exp] 376 / 2e-131 AT5G42130 260 / 1e-85 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10042797 [exp] 211 / 3e-68 AT5G42130 160 / 5e-49 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 119 / 2e-30 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 114 / 2e-28 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10026395 [exp] 107 / 5e-26 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 106 / 1e-25 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 104 / 6e-24 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 103 / 1e-23 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 97 / 4e-22 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189600 [exp] 488 / 7e-173 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 129 / 9e-33 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 118 / 2e-30 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 114 / 6e-29 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.008G043700 [exp] 100 / 9e-23 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 100 / 2e-22 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 94 / 2e-21 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 93 / 4e-21 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 91 / 4e-20 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 90 / 5e-20 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10029770 pacid=23152068 polypeptide=Lus10029770 locus=Lus10029770.g ID=Lus10029770.BGIv1.0 annot-version=v1.0 ATGGAGTCCAATCTCTCTGCATTTCTCGGCCTCCCATCTCCCAACCACCGCCAACCTCCGACCGATTTCCCAACCCTCTTCCNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTCATCATCCCCCACAAAACCCCAACAGCCCCTAAAACCCTTCAATTCGCATCCACTTCCATCTCCTTAACCTCCCAATCCCC TCGCAAATCCCCCTCCCAAACCAGCAGCCCGGCCAAGCTCAAATCCCTGATGAAAGGCCTCTCCGTATTCGAGCGGGCCCTCATCGGAGCAGGCGGAGGC AGTATCGCCGGCGCCTTCACCTACTTCTGCCTCCTCCCACTCGACACAATCAAAACCAAGCTCCAAACCAAAGGCGCCTCCCAGATCTACTCCAGCACCC TCGACGCCGCCGTCAAAACCTTCCAGGAAAAGGGGATCCTAGGGTTCTACCGCGGCGTATCGGCCGTAATAGTCGGATCAGCCGCCTCCTCCGCCGTCTA CTTCGGCACCTGTGAGTTCGGGAAATCGATCCTCTCCAAGCTCGACGACTTCCCTCCACTCCTCATCCCTCCCACCGCAGGCGCGATGGGGAATATCGTC TCGTCGGCAATCATGGTCCCGAAAGAACTCATCACCCAGCGAATGCAGGCGGGAGCGAAAGGAAGGTCGTGGGAAGTGTTGTTGAAGATACTAGAAAACG ACGGCGTATTGGGGCTCTACGCTGGATACTCTGCAACCTTGCTGAGGAATTTGCCTGCTGGAGTGTTGAGTTATTCCTCGTTTGAGTATTTGAAAGCTGC TGTGTTGAGTAAAGCGAACAAGGCACAAATGCAGCCGATTGAGAGCGTGGTGTGTGGGGCATTGGCTGGTGCTATATCAGCTTCGTTGACAACTCCGCTG GATGTTGTGAAGACGAGGATGATGACTCAGGTGAGTAGAGAAGCTGCGGGGAAAGTTTCGGATATGGTGAAGCAGATATTGGTGGAGGAAGGATGGGTTG GGTTCACCAGAGGGATGGGGCCGAGAGTGGTTCACAGTGCTTGTTTCTCGGCGATTGGGTATTTTGCGTTTGAGACTGCTAGGTTGGAGCTTCTGAATCG GTATTTGAAGCATAAGGAGCTTCAGGAATTGAATGATGCTGTTGTTCCTGCCTGA
AA sequence Show only first row Show all	>Lus10029770 pacid=23152068 polypeptide=Lus10029770 locus=Lus10029770.g ID=Lus10029770.BGIv1.0 annot-version=v1.0 MESNLSAFLGLPSPNHRQPPTDFPTLFXXXXXXXXXXXXXIIPHKTPTAPKTLQFASTSISLTSQSPRKSPSQTSSPAKLKSLMKGLSVFERALIGAGGG SIAGAFTYFCLLPLDTIKTKLQTKGASQIYSSTLDAAVKTFQEKGILGFYRGVSAVIVGSAASSAVYFGTCEFGKSILSKLDDFPPLLIPPTAGAMGNIV SSAIMVPKELITQRMQAGAKGRSWEVLLKILENDGVLGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSKANKAQMQPIESVVCGALAGAISASLTTPL DVVKTRMMTQVSREAAGKVSDMVKQILVEEGWVGFTRGMGPRVVHSACFSAIGYFAFETARLELLNRYLKHKELQELNDAVVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	0	1
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	2.2	0.9195
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	2.2	0.9431
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	2.8	0.9318
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	3.5	0.9213
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	6.0	0.9219
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	6.7	0.9068
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	7.3	0.9183
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	7.7	0.9012
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	8.8	0.8981
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	8.8	0.9048

Compare expression of checked genes

Lus10029770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.