Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18710 254 / 1e-80 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G09800 250 / 2e-79 ARM repeat superfamily protein (.1) AT5G64660 242 / 6e-76 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G49810 108 / 6e-26 ARM repeat superfamily protein (.1) AT5G65920 107 / 2e-25 ARM repeat superfamily protein (.1) AT2G35930 87 / 2e-18 PUB23 plant U-box 23 (.1) AT1G29340 86 / 1e-17 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G23030 83 / 5e-17 PUB11 ARM repeat superfamily protein (.1) AT1G49780 82 / 1e-16 PUB26 plant U-box 26 (.1) AT3G52450 81 / 1e-16 PUB22 plant U-box 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042798 [exp] 730 / 0 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10005810 [exp] 284 / 2e-92 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10006791 [exp] 182 / 3e-54 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10006747 [exp] 92 / 2e-20 AT4G21350 405 / 6e-141 plant U-box 8 (.1) Lus10037970 [exp] 94 / 3e-20 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10021267 [exp] 88 / 7e-19 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10012491 [exp] 86 / 1e-18 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10010598 [exp] 87 / 2e-18 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10004191 [exp] 86 / 6e-18 AT3G11840 300 / 2e-95 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070500 [exp] 401 / 2e-138 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.005G189800 [exp] 390 / 1e-133 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.005G057500 [exp] 283 / 8e-92 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.007G110600 [exp] 279 / 1e-90 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.014G014300 [exp] 115 / 4e-28 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.002G116500 [exp] 113 / 1e-27 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.006G277700 [exp] 113 / 2e-27 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 98 / 4e-22 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.007G105300 [exp] 94 / 8e-21 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.005G063700 [exp] 93 / 1e-20 AT1G49780 139 / 3e-37 plant U-box 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10029771 pacid=23151971 polypeptide=Lus10029771 locus=Lus10029771.g ID=Lus10029771.BGIv1.0 annot-version=v1.0 ATGCAAGACCTGTACATCACCGTCCCCAATCTCCTCCGATGTCCCATCTCCCTCGACGTTATGACATCCCCCGTCAGTCTCTGCACCGGCGTCACCTACG ACCGTTCCAGTATCCAGAAATGGTTGGAAACCGGTCACGATACCTGTCCGGCCACTATGCAGGTCCTTCCCAACAAGGACTTCGTCCCCAACCTCACCCT TCTCCGACTCATCAACCTGTACAATCAATCATCGTCCTCTTGCTGCTCCTCCGGTTCCGCCGCCTCTGAGGATCAGGCTCGGATTTGGATTCAACGGATC CGCACCTCCTCCAGCGAAAGAAAGGAGCCGCTCCTTCACCTCGCGGAATTCGCTGGCTGTTCTGCAGCCAACCGGAAGTTGCTCCTTGGAATCGACGGTT TTCTGGAGGCGATTGTAGTTTCGTTGAGCGGGAAGATCGAGGAATTGGAGCTGGCTGTTAGGATTTTGGGATCTTTATCCGGGGAGAACGGGGTTGGGGG AAAACTTAATAGACTGTTGATTCTTCAGAGCAGTAATCGGAATCAATTATCACCGTTGAGTACTATTCTGTCAGAGAGGACGACGAATTCCAGCTCAAAG ATCGCTGGACTCAGAATTTTAGACTCGATATCAATCGATAACCAATCGAAACGGTACGTAGCCGAAACGGAGAATCTTGTGCCGGTCCTCTGCCGTCTCC TGGACTCCGAATCCGATCCGAATCTGCACGATGCAATTTTCTCCCTCCTCATCTCAATCGCCGTGACTCGCTCTCTCAGGAGCCGACTCGTCCAGCTAGG ACTCGTTGTTTCCCTCTCCCGGACGGTTTCCGATCCCAAAGCGAAGGTTGTTCTGGCGGAGAAGTCACTGAAGCTGCTGGCGATCCTGTCGACATGTCCA GACGGCCGAGCAGCGATAAGCAAGGACCCGAATTGCGCGGGAGGGGTCGTGGAGAGGCTGATGAAGGTGTCGAAGGCGGCGACGGAGGACGCGGTAGCGG TGTTGTGGAGCACTTGTTGCTTGTTCAAGGAGCGGACGGTGGCGGAGAAGGCGGTAAAGAATCAGGGACTGACGAAAGTACTTCTGGTGATGCAGAGCGA AGTGGAAGGGAACGTAAAGGCGATGTGCCGGGAATTGGTCAAGGCTTTCAGAGCCGGCTGCACGGCAAACGGGAACGGCGGTGGCGTCGAGAGCTACAAT ACCAAAACGACGCATATCATGCCGTATTAG
AA sequence Show only first row Show all	>Lus10029771 pacid=23151971 polypeptide=Lus10029771 locus=Lus10029771.g ID=Lus10029771.BGIv1.0 annot-version=v1.0 MQDLYITVPNLLRCPISLDVMTSPVSLCTGVTYDRSSIQKWLETGHDTCPATMQVLPNKDFVPNLTLLRLINLYNQSSSSCCSSGSAASEDQARIWIQRI RTSSSERKEPLLHLAEFAGCSAANRKLLLGIDGFLEAIVVSLSGKIEELELAVRILGSLSGENGVGGKLNRLLILQSSNRNQLSPLSTILSERTTNSSSK IAGLRILDSISIDNQSKRYVAETENLVPVLCRLLDSESDPNLHDAIFSLLISIAVTRSLRSRLVQLGLVVSLSRTVSDPKAKVVLAEKSLKLLAILSTCP DGRAAISKDPNCAGGVVERLMKVSKAATEDAVAVLWSTCCLFKERTVAEKAVKNQGLTKVLLVMQSEVEGNVKAMCRELVKAFRAGCTANGNGGGVESYN TKTTHIMPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029771 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	3.2	0.8123
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	8.4	0.8160
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	10.8	0.7850
					Lus10019151 [exp]	14.7	0.8097
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	17.8	0.8113
					Lus10013331 [exp]	18.1	0.8063
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	19.0	0.8070
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	23.7	0.7227
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	25.6	0.8089
					Lus10009892 [exp]	26.1	0.8015

Compare expression of checked genes

Lus10029771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.