Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76950 1330 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 1326 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 937 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 919 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 899 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 824 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 694 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 548 / 1e-178 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 487 / 8e-155 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 177 / 8e-48 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042800 [exp] 1798 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 1683 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 1671 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10038991 [exp] 952 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10030999 [exp] 921 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10009701 [exp] 916 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10027273 [exp] 906 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 871 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 797 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070300 [exp] 1601 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 1572 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 1025 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 929 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 891 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 788 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 757 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 701 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 585 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 535 / 1e-172 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10029772 pacid=23152056 polypeptide=Lus10029772 locus=Lus10029772.g ID=Lus10029772.BGIv1.0 annot-version=v1.0 ATGGCAGATCTTGTTAGCTATGATAATGCCCAGCGTGACACCGAGCAGGCGTTAATTGTTTTGAAGAAGGGTGCTCATCTGTTGACATTTGGTCGCAAGG GAAAGCCTAAGCTATATCCATTCAGACTTTCTTATGATGAGAAAACTTTGACCTGGATCTCAAGCTGTCTTTCAACGGTACCGACATCGTTTCAACGGTA CCGGCATCCTCAAAAGGACTATCTATCCTTTTCTCTTATATACAATAACGGAAAGAGGTCTCTTGATCTGATTTGCAAGGACAGGGTTGAGGCAGAGGTG TGGATTGGAGGCTTGAAGGCTCTAATTGCTTTTGGTCAAAGTGGGCGTTCCAAAATTGACGGATGGACTGATGGGGGCCTCTACGTTGATGACAGCAAGG ATTTGACATCAAATAGTACAAGTGACAGTTCTGTTAGTATCACAAGAGATATTAGTTCCTCGGAGGTATCTATCAGTTATAATCCCATTATTTCTCCCAA GAGATTTCAGCCTCAGAATTCTCCACAATCTGATCGATCACATGTAGGATTAGACAACACAAACATGCAAGTTAAAGGGTCTGGTTCAGATGCTTTTCGG GTCAGTGTTTCCAGTGCACCTAGCACTTCGAGTCATGGGTCTGGGCCAGATGATTATGATGCGTTGGGTGATGTATACTTGTGGGGAGAGGTCCTAAGTG ATAGTGTTGTCAAGATCGGTGCAGATAAAAATGCAGCATATTTAAGTTCTAGAGCAGATATTCTTCTTCCCCGGCTTCTCGAGTCAAATGTGGTTTTAGA TGTAAATCACATTGCGTGCGGAGTAAAGCATGCAGCCCTAGTCACACGACAAGGTGAAATGTTTACGTGGGGTGAAGAATCGGGTGGACGTCTTGGACAT GGTGTAGGGAAGGATGCTATTCAACCTCGTCTCGTTGAATCACTTGCAGTTACCAGCATTGACTTTGTGGCATGTGGAGAGTTCCATACATGCGCAGTTA CAATGGCTGGGGAACTTTATACATGGGGAGATGGCACGCACAATGCTGGCATTCTTGGTCATGGTACTGATGTCAGTCACTGGATACCTAAGAGAATCTC AGGGCCGCTCGAGGGACTGCAAATTGCTTCAGTGACATGTGGGCCGTGGCATACAGCGTTGATAACATCGACAGGGCAGCTTTTTACTTTCGGAGATGGG ACTTTTGGTGTCTTAGGTCATGGTGATAGAGAAAATGTTGCTTATCCTAGAGAGGTAGATTCTTTATCTGGTTTGAGAACTGTTGCTGTTGCATGTGGAG TGTGGCATACAGCTGCTGTCGTGGAAGTTATTGTTACACAGTCTAGTTCGAGTGTTTTTTCTGGAAAACTGTTCACTTGGGGTGATGGAGATAAAAATCG TCTTGGACATGGAGACAAGGAACCTAAGCTGAAGCCAACATGTGTGCCAGCCCTAATTGATTACAATTTCCATAAACTTGCTTGTGGGCATAGTCTAACT GTTGGCCTGACAACATCAGGACAAGTATTTACAATGGGAAGTACTGTTTACGGTCAACTAGGCAGTCCTCAGGCTGATGGGAAGTTGCCTTGCTTGGTGG AAGATAGGCTTTCTGGTGAATGTGTTGAAGAGATTGCTTGTGGTTCATATCACGTTGCAGTTTTGACATCGAAGAACGAAGTTTATACATGGGGAAAGGG AGCCAATGGGAGGCTGGGCCACGGAGATATCGAAGATCGTAAAATACCAACTCTTGTTGAAGGCTTGAAGGATAGACATGTAAAAAATATTGCTTGTGGT GCAAACTACACTGCGGTCATATGTCTTCACAAATGGGTATCTGGTGCTGAGCAATCTCAGTGTTCTTCTTGCAGACAGGCTTTTGGCTTTACTCGAAAGA GACATAACTGCTATAATTGTGGTCTTGTGCACTGCCACTCGTGCAGTTCAAGAAAAGCAATAAGAGCAGCCCTGGCTCCAAATCCTGGGAAACCATATCG TGTTTGTGATTCTTGTTACACAAAGCTTAGCAAAGTTTCAGAATCTAGTAACAATAGGAGAAACTCAGCACCTCGCCTTTCAGGTGTAAGCAAGGACCGT TTAGATAAGTCCGAGATTAGGTCATCCAAGGCTGGTTTGCTTTCTAATGTCGATTTGATTAAGCAATTAGATAGCAAAGCAGCAAAACAAGGAAAGAAAG CTGAAACATTTTCCTTGGTTCGTTCCCCTCAAACACCATCTTTGTTGCAGCTGAGAGATGTTGTTTTGTCCACTACCATTGATTTGCGATCAAAGGTTCC AAAACCAGTTCTTATATCATCTGGTATGAGTTCAAGGTCTGTATCCCCTTTCTCAAGGAGACCTAGCCCTCCTAGGTCAGCGACACCTGTTCCAACAACA TCTGGGCTTTCGTTCTCTAAAAGTATTGCTGATAGTTTGAAGAAAACTAATGAGCTTCTGAATCAGGAAGTGTTAAAGTTGCGTTCACAGGTTGACAGCT TGAAACAGAGATCTGAATTCCAAGAATTGGAGCTTCAAAGATCAGCCAAAAAAATGCAAGAAGCTATGGCAATGGCTGCCGAAGAATCAGCCAAATCCAG AGCTGCAAAAGATGTCATCAAGTCCCTCACTGCACAGCTTAAGGATTTAGCTGAAAGGTTGCCCCCTGGCGTCTACGACCCTGAGAACGTGAAGCCAGCT CATCTACCAAACGGGTTGGAGTCTAATGGTGTTCATCATCCTGACACCAAGGTAAACCAGAATTTGAGATCCGATTCGATGAGTGGGGTTTCCTTGTTGG CTCCCACTGGAAACGATCCGAGTTCAGCAAATGGAAATCATCGTTCAATGAAGTCATTCGGGGACCTGTCAGGACTCGGTGGCAGAGAAGACCGATTGGA TGCCAGACTTTCTGATGTCTCGGGGGCTCGCTCGAGTAGGAGCATGTCCGAGTCAGTTGATGGGAACGAATCCACCAAGCCCATTCAAGGTGGTGAGAAT GGTTTGAAACCTCGGGAATCAGCTTTACCTGTCGAGGTAAATGCCGAATGGATTGAACAGTATGAGCCCGGCGTGTACATAACTCTTGTGGCCCTTCGTG ACGGGACTAGAGATCTCAAACGCGTCCGCTTCAGCCGGAGAAGATTTGGGGAGCATCAAGCGGAGATGTGGTGGTCGGAGAATCGGGAGAAGGTATACCA GCGATACAACGTGCGGGGTTCAGAGAAATCGTCGGTATCTGGCCAGGCTGCTCGAAGATCTGAAGGGTCAGTGTCATCGGCTGCCTAG
AA sequence Show only first row Show all	>Lus10029772 pacid=23152056 polypeptide=Lus10029772 locus=Lus10029772.g ID=Lus10029772.BGIv1.0 annot-version=v1.0 MADLVSYDNAQRDTEQALIVLKKGAHLLTFGRKGKPKLYPFRLSYDEKTLTWISSCLSTVPTSFQRYRHPQKDYLSFSLIYNNGKRSLDLICKDRVEAEV WIGGLKALIAFGQSGRSKIDGWTDGGLYVDDSKDLTSNSTSDSSVSITRDISSSEVSISYNPIISPKRFQPQNSPQSDRSHVGLDNTNMQVKGSGSDAFR VSVSSAPSTSSHGSGPDDYDALGDVYLWGEVLSDSVVKIGADKNAAYLSSRADILLPRLLESNVVLDVNHIACGVKHAALVTRQGEMFTWGEESGGRLGH GVGKDAIQPRLVESLAVTSIDFVACGEFHTCAVTMAGELYTWGDGTHNAGILGHGTDVSHWIPKRISGPLEGLQIASVTCGPWHTALITSTGQLFTFGDG TFGVLGHGDRENVAYPREVDSLSGLRTVAVACGVWHTAAVVEVIVTQSSSSVFSGKLFTWGDGDKNRLGHGDKEPKLKPTCVPALIDYNFHKLACGHSLT VGLTTSGQVFTMGSTVYGQLGSPQADGKLPCLVEDRLSGECVEEIACGSYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKIPTLVEGLKDRHVKNIACG ANYTAVICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSRKAIRAALAPNPGKPYRVCDSCYTKLSKVSESSNNRRNSAPRLSGVSKDR LDKSEIRSSKAGLLSNVDLIKQLDSKAAKQGKKAETFSLVRSPQTPSLLQLRDVVLSTTIDLRSKVPKPVLISSGMSSRSVSPFSRRPSPPRSATPVPTT SGLSFSKSIADSLKKTNELLNQEVLKLRSQVDSLKQRSEFQELELQRSAKKMQEAMAMAAEESAKSRAAKDVIKSLTAQLKDLAERLPPGVYDPENVKPA HLPNGLESNGVHHPDTKVNQNLRSDSMSGVSLLAPTGNDPSSANGNHRSMKSFGDLSGLGGREDRLDARLSDVSGARSSRSMSESVDGNESTKPIQGGEN GLKPRESALPVEVNAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAEMWWSENREKVYQRYNVRGSEKSSVSGQAARRSEGSVSSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	0	1
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10034457 [exp]	13.0	0.6439
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	14.8	0.6321
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	19.3	0.6109
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	19.6	0.6216
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	21.1	0.6366
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10021248 [exp]	22.0	0.6127
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	29.8	0.6201
AT5G42140			Regulator of chromosome conden...		Lus10042800 [exp]	41.5	0.6235
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	50.8	0.5776
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10014336 [exp]	58.4	0.5574

Compare expression of checked genes

Lus10029772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.