Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43700 193 / 7e-59 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G31370 174 / 2e-51 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G40620 174 / 2e-51 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 170 / 3e-51 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G06070 174 / 9e-51 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 171 / 1e-48 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 159 / 3e-44 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G42380 95 / 5e-22 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 91 / 1e-20 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12940 91 / 1e-20 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042802 [exp] 405 / 7e-142 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 271 / 2e-89 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018899 [exp] 266 / 1e-87 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10008605 [exp] 178 / 6e-53 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 177 / 6e-53 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10042211 [exp] 176 / 3e-52 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10024204 [exp] 175 / 3e-52 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10042057 [exp] 169 / 1e-47 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018061 [exp] 169 / 1e-47 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069500 [exp] 278 / 4e-92 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 264 / 7e-87 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G091400 [exp] 182 / 1e-54 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 182 / 2e-54 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 179 / 5e-53 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.017G027400 [exp] 177 / 7e-52 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 170 / 2e-49 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G163800 [exp] 167 / 6e-47 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.009G125400 [exp] 166 / 1e-46 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G124400 [exp] 93 / 2e-21 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10029773 pacid=23152069 polypeptide=Lus10029773 locus=Lus10029773.g ID=Lus10029773.BGIv1.0 annot-version=v1.0 ATGGATTCCGCCAAGTACGGCGGCAAGCGGCCGTTGACAGATGACATAGACCAGATGCCGGAAGCCCCTCAGCGTGGGTGGCACCATCGCCGGGCTCACT CCGACACTTCCTTCCGCTTCGACGACCTCCTGCTCTTTGACCCTTCCGACCTCGACCTATCGTCACTTGACTTCCCCAACGCCGCTCCTCCACGTGGAGC TCCCATGGCCGTCGATTCTCCGTCGATCTCCGACGACTCGACCTCCAACGGCTGTGCTGCCCCTCCGCCTAATCCGAGGGCTAGACCGATCAATCATCTC CGTAGCTTGTCCGTGGACTCCGACTTCTTCGACGGGTTCGGCCTAGGGTATGGAGATGAGAAGCCTGGCGAGAAAGGGATTGCTGCTGCTGCGGGAACTG GAGGAGGTGAAAGGAGAGTCCATCACAGGCACAGCAGCTCCATGGACGGTTCTAGCTGTTCGGCTTCGTTTGAGGGGGATTCTTTTATGGATGATGGTAT GAAGAAGGCCATGGCTCCTGATAGACTTGCTGAGCTCTCTCTTATTGATCCCAAGAGAGCTAAAAGGATTCTTGCTAATAGGCAATCTGCAGCTCGGTCA AAGGAGAGGAAAATACGGTATACGGGTGAGCTTGAGAGGAAGGTTCATACACTTCAGACCGAAGCAACCACCCTCTCTGCCCAAGTCACGGTTCTCCAGA GGGATACAAGTGGATTAAATACTGAGAACAGAGAGTTGAAACTGCGGTTGCAAGCTATGGAGCAACAAGCGCATCTTAGAGATGCACTGAATGAAGCACT AAGGGAAGAAGTGCAGCGTCTGAAGATAGCAGCTGGTCAAATGCCAGTTTCAAATGGAAACCCATTCCACCGCCCCCAATATTCTTCACAACAGCCACCT CCGCAGCAAACCCAGCAGCAGGGTCTTCCGCCACAGTCACAGCCTCCTAACAGCCAGAACTCAAATGGGCAACCCCGCCGTGGCTTCCCCAACTTTGGGC AGAGGGTGTAG
AA sequence Show only first row Show all	>Lus10029773 pacid=23152069 polypeptide=Lus10029773 locus=Lus10029773.g ID=Lus10029773.BGIv1.0 annot-version=v1.0 MDSAKYGGKRPLTDDIDQMPEAPQRGWHHRRAHSDTSFRFDDLLLFDPSDLDLSSLDFPNAAPPRGAPMAVDSPSISDDSTSNGCAAPPPNPRARPINHL RSLSVDSDFFDGFGLGYGDEKPGEKGIAAAAGTGGGERRVHHRHSSSMDGSSCSASFEGDSFMDDGMKKAMAPDRLAELSLIDPKRAKRILANRQSAARS KERKIRYTGELERKVHTLQTEATTLSAQVTVLQRDTSGLNTENRELKLRLQAMEQQAHLRDALNEALREEVQRLKIAAGQMPVSNGNPFHRPQYSSQQPP PQQTQQQGLPPQSQPPNSQNSNGQPRRGFPNFGQRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10029773 [exp]	0	1
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	1.0	0.8604
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	8.5	0.7922
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	10.0	0.7471
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	13.4	0.7574
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	13.7	0.7260
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	15.1	0.7782
AT1G16840			unknown protein		Lus10037317 [exp]	18.8	0.7193
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	19.5	0.7738
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	21.8	0.7598
AT1G16760			Protein kinase protein with ad...		Lus10009895 [exp]	21.8	0.7369

Compare expression of checked genes

Lus10029773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.