Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34900 327 / 8e-110 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G52280 301 / 4e-100 GTE6 general transcription factor group E6 (.1.2) AT1G06230 105 / 2e-24 GTE4 global transcription factor group E4 (.1.2.3) AT5G10550 102 / 2e-23 GTE2 global transcription factor group E2 (.1) AT5G14270 97 / 1e-21 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G65630 96 / 3e-21 GTE7 global transcription factor group E7 (.1) AT1G73150 94 / 1e-20 GTE3 global transcription factor group E3 (.1) AT1G17790 90 / 2e-19 DNA-binding bromodomain-containing protein (.1) AT3G27260 88 / 1e-18 GTE8 global transcription factor group E8 (.1.2) AT5G63320 87 / 1e-18 NPX1 nuclear protein X1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042803 [exp] 599 / 0 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10018900 [exp] 332 / 7e-113 AT2G34900 254 / 2e-84 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10008393 [exp] 171 / 2e-51 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2) Lus10017661 [exp] 114 / 2e-27 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 114 / 2e-27 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 114 / 2e-27 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10014609 [exp] 102 / 2e-23 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10032076 [exp] 101 / 6e-23 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10039630 [exp] 86 / 6e-18 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043000 [exp] 476 / 1e-168 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 450 / 2e-158 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G073800 [exp] 338 / 2e-114 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.011G096400 [exp] 120 / 5e-30 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 105 / 2e-24 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 105 / 2e-24 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 103 / 2e-24 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 96 / 3e-21 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.015G091800 [exp] 93 / 3e-20 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 89 / 4e-19 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10029774 pacid=23151968 polypeptide=Lus10029774 locus=Lus10029774.g ID=Lus10029774.BGIv1.0 annot-version=v1.0 ATGGAATCATCAGTCGCCGCACCTCTCCTGGATTTCCTACCTGAGCATAACCCTAACCCTGCCGAAGTCGAGGGTTTCAAGCTCCGGGTCGACGAAGTTG TCCAGAACGTCGATAAGCTTGAGAGCAAGGTGAATGAAGTTGAAAAGTTTTACTCGAACCTGAACAAGAAGCAGCAGCAGACGGTGTCAAAAGGGAGTTC GGTTGTGAAAGAGAAAGAGAAGGAGAAGCAGGTCCTTAGCATCAAGAAGCAGCAGCAAGAGGCTATGAAGCGGGAAGCTGCCGCTGCTAAGAGAATGCAG GAGCTTATTCGTCAATTTGGGTCTGTTCTTCGTCAGCTTACACAACACAAATGGGCATGGCCTTTTTTGCAACCCGTGGATGTTGAAGGCCTTGGCTTAC ATGACTACTACGAGGTTATTGATAAGCCAATGGACTTCAGTACGATAAAAAATCTGATGGAAACCAAGGACGCAACTGGTTATAAGAATGTCAGGGAGAT ATGTGCCGACGTGAGATTAGTGTTTAAGAATGCAATGAAATATAACGAAGAAAGGAGTGATGCTCATGTTATGGCAAAAACTTTGTTGGACAAGTTTGAA GAAAAATGGCTGCAATTCCTTCCAAAAGTCACCGAAGAGGAGAGAAGAAGAGAAGAGGAGGAAGTGGAGGCTCAGTTGGATATGCAGCTTGCCCAGGAGG CTGCTCATGCTAAAATGGCTAGAGATTTGAGCAATGAGCTCTATGAACTCGATATGCATCTTGAGGACCTCAGAGAAATGGTTGTTCAAAACTGCAGAAA GTGGTCAACCGGAGATAAAAGGAAGCTTGGAGCAGCCCTAACAAGATTGTCTCCTGAAGATCTCACAAAAGCACTGGAGATTGTTGCGCAAAATAACCCA GGGTTCCAAGCAACAGCAGAGGAAGTGGACCTTGATATTGATGCACAGAGTGAATCTACTTTGTGGAGGCTGAAGTTCTTTGTGAGGGAAGCTCTGGAAG CACAAGGTAAAACTGCAGCTGCTAGCACGGGCAGGAACAACAACGATGAAAAGAACACCAACAACAACAGCAATAATAAACGAAAAAGAGAGATCTGTGA TGCCATTGCGAAAACTGCCAAGAGGAGGAGCAGGAAGTCGTGA
AA sequence Show only first row Show all	>Lus10029774 pacid=23151968 polypeptide=Lus10029774 locus=Lus10029774.g ID=Lus10029774.BGIv1.0 annot-version=v1.0 MESSVAAPLLDFLPEHNPNPAEVEGFKLRVDEVVQNVDKLESKVNEVEKFYSNLNKKQQQTVSKGSSVVKEKEKEKQVLSIKKQQQEAMKREAAAAKRMQ ELIRQFGSVLRQLTQHKWAWPFLQPVDVEGLGLHDYYEVIDKPMDFSTIKNLMETKDATGYKNVREICADVRLVFKNAMKYNEERSDAHVMAKTLLDKFE EKWLQFLPKVTEEERRREEEEVEAQLDMQLAQEAAHAKMARDLSNELYELDMHLEDLREMVVQNCRKWSTGDKRKLGAALTRLSPEDLTKALEIVAQNNP GFQATAEEVDLDIDAQSESTLWRLKFFVREALEAQGKTAAASTGRNNNDEKNTNNNSNNKRKREICDAIAKTAKRRSRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	0	1
AT4G38980			unknown protein		Lus10031089 [exp]	1.7	0.8441
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	2.4	0.8747
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	4.2	0.8479
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	8.1	0.8364
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	8.5	0.8351
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	11.0	0.8355
AT5G50840			unknown protein		Lus10040383 [exp]	13.6	0.8365
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	13.7	0.8110
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	14.5	0.8289
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	15.5	0.8324

Compare expression of checked genes

Lus10029774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.