Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 244 / 7e-83 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 241 / 2e-81 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 226 / 2e-75 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 189 / 8e-61 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 40 / 0.0008 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042804 [exp] 330 / 3e-116 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 281 / 4e-97 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 279 / 5e-96 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 274 / 4e-94 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 243 / 9e-82 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 208 / 5e-68 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 205 / 1e-66 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 184 / 2e-59 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 253 / 8e-86 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 247 / 2e-83 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 224 / 2e-74 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 108 / 2e-28 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 71 / 2e-14 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 40 / 0.0006 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10029776 pacid=23152001 polypeptide=Lus10029776 locus=Lus10029776.g ID=Lus10029776.BGIv1.0 annot-version=v1.0 ATGGCAAGCATCAACCAATTCCCGACCGATGCACATACCCACCAATCAACCATCCAAGACACCAAGGAGGAAGAGCCATTCGACTACGCCAAGAGGGCGC AGTGGCTACGAGCTGCTGTGCTCGGAGCCAACGATGGTCTGGTCTCCACGGCGTCCCTCATGATGGGAGTTGGAGCCGTGAGGCAGGATATCAAGGCCAT GATTCTTACTGGGTTCGCGGGCCTCGTGGCAGGGGCCTGCAGCATGGCCATAGGGGAGTTTGTGTCTGTTTACTCTCAGTGTGACATTGAGGTGGCCCAG ATGAAGCGAGACAAAGAGAGGGGTTCCTTTGAGGAAGGGGAGGAGGAGAAAGAGAGCTTGCCAAATCCGATGCAGGTTGCAGCTGTTTCGGGTATGGCTT TCTCGGTGGGGGCAATGGTACCATTATTGTCGGCTTCTTTTATAAAGTCGTACCCGGTGAGGCTTGGAGCGATTATAGCAGCGGTGAGCTTGGCGCTGGT TGTGTTTGGTTGGGTTGGGGCTTTGTTAGGGAAGGCTCCGGTGGTTAAGTCGTCGATGAGGGTGTTGATTGGTGGGTGGGTTGCTATGGCTATCACTTTT GCTTTGACTAAATTACTTGTCTCCAGCGATATCGATTTGATTTGA
AA sequence Show only first row Show all	>Lus10029776 pacid=23152001 polypeptide=Lus10029776 locus=Lus10029776.g ID=Lus10029776.BGIv1.0 annot-version=v1.0 MASINQFPTDAHTHQSTIQDTKEEEPFDYAKRAQWLRAAVLGANDGLVSTASLMMGVGAVRQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQCDIEVAQ MKRDKERGSFEEGEEEKESLPNPMQVAAVSGMAFSVGAMVPLLSASFIKSYPVRLGAIIAAVSLALVVFGWVGALLGKAPVVKSSMRVLIGGWVAMAITF ALTKLLVSSDIDLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	0	1
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	1.4	0.8801
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	2.4	0.8511
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	3.9	0.8362
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	5.3	0.8157
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	5.5	0.7062
AT4G02160			unknown protein		Lus10010018 [exp]	5.5	0.8092
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	7.3	0.6687
AT2G18193			P-loop containing nucleoside t...		Lus10031318 [exp]	8.1	0.6383
					Lus10017936 [exp]	8.5	0.7848
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10014513 [exp]	13.6	0.6312

Compare expression of checked genes

Lus10029776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.