Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21200 455 / 1e-158 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 351 / 1e-118 Trihelix unknown protein AT3G10040 161 / 6e-45 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042805 [exp] 719 / 0 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 369 / 4e-126 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 347 / 3e-117 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 190 / 5e-55 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10008643 [exp] 187 / 4e-54 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068700 [exp] 543 / 0 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 540 / 0 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 283 / 5e-91 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 275 / 7e-88 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 206 / 5e-61 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.016G096300 [exp] 202 / 8e-60 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1) Potri.008G025600 [exp] 43 / 0.0003 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.010G235000 [exp] 42 / 0.0007 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029777 pacid=23152005 polypeptide=Lus10029777 locus=Lus10029777.g ID=Lus10029777.BGIv1.0 annot-version=v1.0 ATGGAGGGAAATACATCACAAGGTGGGATCTTTTCTGGTGGCCTTCCTTTTGGAGGTCTTGACTTGCAAGGATCACTGAGGATTCATCACCAAGCACAAC ATCCACATGCTGTAAACCACCACCAAGGATCGTCAGCACATGCCTCGATTCCTGAGGGTTTTCCTCTTACAATGGGAACCATGCACAGCACTGATCATCA CTCTCTTTCTATGGCTGACTACAAGAAGTTAGATACAAGGAAAAACTCACTTAGTGAGGACGATGAACCAAGTTATACCGAAGAAGGTGGTGCTGATGGC CATAATGAATCAAACAGAGGGAAGAAGGGTTCACCTTGGCAACGTGTCAAGTGGACTGATAAGATGATTAAGCTTTTGATAACTGCCGTGTCTTATATCG GGGAGGATGGGGCGTCGGAGTGTGGAAGTGAGATGAGAAGGAAATTTGTGGTCTTGCAGAAGAAGGGGAAGTGGAAATCTGTTTCCAAGGTCATGGCTGA AAGGGGGTTTCATGTTTCTCCTCAGCAGTGCGAGGACAAATTCAATGACCTCAACAAGCGATACAAAAAGCTTAATGACATGCTTGGAAGAGGCACTTCT TGCCAAGTTGTTGAAAACCCCGCTCTTCTGGATGTAATAGACTATCTTTCGGAGAAGGAGAAAGATGATGTTAGGAAGATATTAAGCTCAAAGCATCTGT TTTATGAGGAGATGTGTTCGTACCATAATGGAAACCGATTGCATCTGCCTCATGACCCTGCATTGCAGCGTTCCCTGCAGTTGGCTCTTAGGAGTAGAGA TGATAATGACAATGATGGCATGAGGAGGCTTGACAATGATGATCTCGATGAAGATGATCCGGATACTGATGGTCATGATGAATTTGAGGAGAATTTCGCT CCCAGCAGGACTTTGGGAGGCTCCTCTCTGAAGAGGTTAAGGCAGGATCATGTATGTGTCGCCGTATCTTCTCAGGATGTTCATAAGGCTTCTCATTCTC ATCCCACTATCGCTCCCATGGTTGATATGAACCAAGCTTCACCTGAAAGTGCCAGACAAGCTATGGGGCAGAAGCAGTGGATGGAATATCGTACCCTTCA GTTAGAAGAACAGCGGCTGCAAATCCAAGTTGAGATATTGGAACTAGAAAAACAGCGTTTCAAGTGGGAAAGATTCAGTCAGAAAAGAGACCACGAACTG GAGAAATTCAGAATGCAAAACGAGAGAATGAAGCTAGAGAATGAGCGCATGGCATTTGAACTGAAGCACAAGGAAATGGGTGCTGATTTCAGTTAG
AA sequence Show only first row Show all	>Lus10029777 pacid=23152005 polypeptide=Lus10029777 locus=Lus10029777.g ID=Lus10029777.BGIv1.0 annot-version=v1.0 MEGNTSQGGIFSGGLPFGGLDLQGSLRIHHQAQHPHAVNHHQGSSAHASIPEGFPLTMGTMHSTDHHSLSMADYKKLDTRKNSLSEDDEPSYTEEGGADG HNESNRGKKGSPWQRVKWTDKMIKLLITAVSYIGEDGASECGSEMRRKFVVLQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGTS CQVVENPALLDVIDYLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRSRDDNDNDGMRRLDNDDLDEDDPDTDGHDEFEENFA PSRTLGGSSLKRLRQDHVCVAVSSQDVHKASHSHPTIAPMVDMNQASPESARQAMGQKQWMEYRTLQLEEQRLQIQVEILELEKQRFKWERFSQKRDHEL EKFRMQNERMKLENERMAFELKHKEMGADFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	0	1
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	1.4	0.8359
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	1.4	0.8361
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	3.9	0.7592
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	7.3	0.8069
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	8.2	0.8207
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	14.0	0.8346
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	16.5	0.7315
					Lus10007581 [exp]	17.0	0.8089
AT3G18360			VQ motif-containing protein (....		Lus10009033 [exp]	17.7	0.7081
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	21.2	0.7566

Compare expression of checked genes

Lus10029777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.