Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76890 234 / 2e-68 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 197 / 8e-55 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 156 / 7e-40 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G03680 119 / 5e-28 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 116 / 2e-27 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 116 / 6e-27 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 99 / 7e-22 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 62 / 6e-10 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 56 / 2e-08 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 50 / 2e-06 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042806 [exp] 426 / 2e-140 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 315 / 5e-98 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 170 / 4e-46 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 168 / 1e-44 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 150 / 4e-39 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10028582 [exp] 146 / 9e-39 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10020873 [exp] 144 / 2e-36 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10023872 [exp] 122 / 7e-30 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10014375 [exp] 121 / 5e-29 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G191900 [exp] 288 / 1e-90 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 242 / 4e-71 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 198 / 7e-55 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.005G192000 [exp] 177 / 1e-47 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 168 / 4e-45 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 169 / 4e-44 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.019G010200 [exp] 163 / 3e-43 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 163 / 6e-42 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049500 [exp] 131 / 1e-33 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049700 [exp] 130 / 2e-31 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029778 pacid=23151992 polypeptide=Lus10029778 locus=Lus10029778.g ID=Lus10029778.BGIv1.0 annot-version=v1.0 ATGCTCTGNNNNNNNNNNNCTAGTGTTGCCTCTTCCGTTAATCCAGGCGGTGATACTGCTCAACACCACCACCATAACCAGTATCAACCGCATCACAATC CCAATCCTCCACCGACTTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGGAATTGTCGGCGGATTTGTTCAGGAAGGAGCTGGCGAAGCTGGAGGAGG AGGCGGTCGCGGTGGCGGCGCCGGACATGTTGGATCGAGTTCCGGCGGCGAGGAAGATAGGTTCGGCAGCGGCGACCGGAGCTTCGGGGGAAACCGGTGG CCTCGGCAGGGAACTTTGGCGTTGCTGAAAATTAGGACGGATATGGACGCCACGTTTCGCGATGCTAGTGTCAAAGGACCTCTGTGGGACGACGTCTCCA GGAAGATGGGAGAGCTTGGGTATCATCGAAGTGCCAAAAAATGCAAAGAGAAGTTTGAGAATGTGTACAAGTATCACAAGCGAACCAAAGATGGCCGCGT TGGCAAACACGAAGGCAAAACTTATCGCTACTTTGAACAACTTGAAGCCTTCGAGACCCACCCACCCGGCGGTGCTCCACCACCTCCTCCTCCGCAACTG CAAATGCAGCAAGTTATCCATCCTTCTAATCCGCCACAAACTTTACCGGCCACCGTTGTTACTCCTCACAATACTACTGTTCCATCGACAACTGTCGCAA CAGCTGCTTCCATTATAGCCCCTCCGCCGGCCGCAATTAACATCACTACAACTGCTGTTCCTCAACTGACGAGTTTTCCGGTGTATCATCCTCCATCATT CTCCACATTCTCCGCCGCAGATCTGATGTCGAATTCGACCTCCTCCGCGTCGACGTCGTCGGACGTGGAGATCCACGGCAGACACAGACGGAAGAGGAAG TGGAAGGACTTCTTCGGGCGGCTGATGACGGAGGTTGTTCAGAAGCAGGAGGAGATGCAAAGGAAGTTTCTGGAAGCAATAGAGAAGCGAGAGCAGGAGC GTTTGGCTAGAGAAGAGTCTTGGCGACACCAAGAGATGTCTCGTATAAATAGGGAGCGGGAGATACTAGCTGAGGAGAGATCCATCGCCGCCGCTAAGGA CGCCGCAGTAATGTCCTTCCTCCAGAAACTCTCCGATCAGCAGGCCCCTGGGGCACCGCCGCTGCAGCTTCCTCAATCCATAGCTCAAACCACTCCTCCT CCGCCGCCACCAATAACACCGCAGCCACCAACAACCACAGCACCACCGCCAGCTTCAGTATCAGCTCCGCCGCCGCAATCACAATCGGCGCCGAATCCAG TACAGGCGGCGCCGTCGCCGGCACCATCGATGATGACGCCCTCACCAGCTCATCAACATCATCACATACTGCAACAATCGGGGAGTCAACTTCAAATGAC GACAGGTATGAGTAGAATGGATAGTGAAGCGGACCGGAATTTTCTGCCGGCGAGCTCGTCTCGATGGCCGAAAGTGGAAGTGGAAGCTCTGATATCACTA AGGACGAATCTGGACTCCAAGTACGAAGAGAACGGTCCGAAAGGCCCTTTGTGGGAGGACATATCGGCAGGGATGAAGAGATTGGGATACAACCGGAGCT CAAAGAGATGTAAAGAGAAATGGGAGAATATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAATCGGAAGCGCCCAGAAGATTCCAAGACTTGTCCGTA TTTTCACCAGCTGGATGTTCTTTACAGGCAGAAGTTGGAAGGAGGAGGCGGAGGTTCTACGTCGATGACGGCACCGAATTCAGGTTCGGGTCAGCAGCAG CTCCCGACGAGGCCAGAGATGAATTCGGTTCCTCTGATGGTTCAGCCGGAGCAACAATGGCCGCCGCAGCCTCCACCTCCGGCAGCTCCTTATAATCAGG AGCACCCCCGGGGTCCGGTGACGCAGGATATGGACAGCGAGGATCACGACGATGAGGAAGAAGACTATGACGATGAGGATGACGACGAGGGAGGTGGAGG AGGATACGAACTGGTACCGAATAAGCCAACGTAG
AA sequence Show only first row Show all	>Lus10029778 pacid=23151992 polypeptide=Lus10029778 locus=Lus10029778.g ID=Lus10029778.BGIv1.0 annot-version=v1.0 MLXXXXXSVASSVNPGGDTAQHHHHNQYQPHHNPNPPPTSSSSSAAAAAAGIVGGFVQEGAGEAGGGGGRGGGAGHVGSSSGGEEDRFGSGDRSFGGNRW PRQGTLALLKIRTDMDATFRDASVKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKHEGKTYRYFEQLEAFETHPPGGAPPPPPPQL QMQQVIHPSNPPQTLPATVVTPHNTTVPSTTVATAASIIAPPPAAINITTTAVPQLTSFPVYHPPSFSTFSAADLMSNSTSSASTSSDVEIHGRHRRKRK WKDFFGRLMTEVVQKQEEMQRKFLEAIEKREQERLAREESWRHQEMSRINREREILAEERSIAAAKDAAVMSFLQKLSDQQAPGAPPLQLPQSIAQTTPP PPPPITPQPPTTTAPPPASVSAPPPQSQSAPNPVQAAPSPAPSMMTPSPAHQHHHILQQSGSQLQMTTGMSRMDSEADRNFLPASSSRWPKVEVEALISL RTNLDSKYEENGPKGPLWEDISAGMKRLGYNRSSKRCKEKWENINKYFKKVKESNRKRPEDSKTCPYFHQLDVLYRQKLEGGGGGSTSMTAPNSGSGQQQ LPTRPEMNSVPLMVQPEQQWPPQPPPPAAPYNQEHPRGPVTQDMDSEDHDDEEEDYDDEDDDEGGGGGYELVPNKPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	1.0	0.9079
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	2.4	0.8488
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	6.0	0.8672
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	7.3	0.8225
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	9.5	0.8039
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	9.9	0.8143
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	10.6	0.7639
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	11.4	0.8235
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	11.6	0.7414
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	13.4	0.7976

Compare expression of checked genes

Lus10029778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.