Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53760 954 / 0 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT5G06680 100 / 1e-21 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042807 [exp] 1282 / 0 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10016246 [exp] 100 / 3e-21 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029296 [exp] 80 / 4e-15 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10018892 [exp] 51 / 3e-06 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 51 / 4e-06 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128400 [exp] 1050 / 0 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.006G194200 [exp] 100 / 2e-21 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G059900 [exp] 93 / 3e-19 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G000100 [exp] 54 / 4e-07 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10029779 pacid=23152111 polypeptide=Lus10029779 locus=Lus10029779.g ID=Lus10029779.BGIv1.0 annot-version=v1.0 ATGTTGCACGAGCTCCTACTGGCACTTTTAGGTTACACCGGAGATCTCGTCGTCGACGAAAGAGACCACCAGTCCTCTCTCGGTGTTAACCCTCCCATCT CCGACCACCGCTCCTTCAAGCTCGCTCCAGACCTCTCCTTTCTCCACCCTTCCGACAGGGATCTTGTGGGAAGGATCATTGCATTAGGGTTCTATTACAG AGAGCTTGATCGCTTCGCTTCCAAAGCTCGCAACTTGAGTTGCATTAGGTCTTCGTATGCGTCTCCTCCAATGCCTGAGTTGTCCAACAGCGGGACAGAA AAACAACAGCACAGCGTCTACAGGAGGGCCATAGCTAATGGGATCGTGGAGATACTCTCCATTTACAGGTCTGCCGTTCTTCACATTGAACAGAAGTTAT TGTCCGAGACGGTGCCCATCCTTGCTACACTCACTCAAGGCCTGAACAAGTTTTTTGTCCTGTTACCACCTCTGTATGAGCTGGTTTTGGAGATTGAACG TGAAAATGTTCGAGGGGGACAGCTTCTTACCCTCTTACATAAACGGTGCCATTGTGGGGTTCCTGAACTACAGACATGCATTCAAAGGCTTCTTTGGCAT GGGCACCAAGTAATGTATAACCAGCTTGCATCATGGATGGTCTATGGGATCCTTCAAGATCACCATGGTGAATTTTTCATCAGAAGGTTAGAAAGGAAGG ATGAAAAGCACAATTCCTCTGATCATGAAACGTCAGAAAGATACAGGCGTTTGTCAACAGATGATGCATCTTTGACTGATTGGCACTCAGGATTTGAGAC TTGTCTGGATATGCTGCCCTCGTATATCCCTACAAATATTGCTGATTCAATTCTTTTTGCTGGTAAAGCCATTCGCATTTTGCGGAATCCAAGTCCAGCA TTCCTATTGAAGGATCCATTAGATAACCAAGAGGTGATAAAAGGTACTCAAAAGGTACAGGCATTCATGGGACAGTTTTCCATTCATGATGAGCCCTTCA TGACAACAACCCATATTGGTGAGGAATTGCTTCCACACTCTGAAGCTGATAAGATTGAAGTTATGCTTAAGGACTTGAAGGATTCGTCTGAGTTTCACAA AAGATTGTTTGAAAGTGCTGTTGGATGCATCCGAGCTGTTGCAGCTAGTCATCTTTGGCAGCTTGTGGTTGTGCGTGCTGACTTGAATGGTCACCTGAAG GCTCTCAAGGATTATTTCCTGCTTGCTAAAGGAGACTTTTTCCAGTGTTTTCTTGAGGAGGGCCGGCATTTGATGCGCTTGCCACCTCGGCAATCCACTG CTGAAGCTGATCTCATGGTTCCATTCCAGTTGGCTTCAATGAAGACGATTGGGGAAGAAGACATATATTTTTCTCGAGTATCCTTGCGGATGGCTTCGTT TGGAACTTCAAGTAAATCCTTCATTGATGCAACCTCAAGCTCTGGACTATCAAGTGCTTCGTCTGAGATGTCACTTAGTGGATGGGACGGTATTGCACTT GAATATACTGTTGAATGGCCGTTGCAGTTGTTCTTTACACAAGAAGTACTGTCTGATTACCTTAAGATATTCCAGTACTTGTTGAGGCTCAAGCGGACGC AGATGGAGTTGGACAAATCATGGGCCTTGGGGATGCATCAGGATCACAAACGCTTCCAAAAGCGTTGCAACAAGAACATGGGCTCTTCGTTGTCTCAGCA GCGACAACAACAATTTAGGCCTCTGTGGCGTGTTAGAGAGCATATGGCGTTTTTAATTAGAAATCTCCAGTTCTATATCCAGGTGGACGTCATAGAATCT CAATGGAATGTTTTGCAAGCCCATATTCAAGATTCCCAAGACTTTACTGAACTTGTCGGCTTCCATCAAGCATATTTGTCAGCTTTGATATCACAGTCGT TTGTAGACATTGGTTCTTTGTCAAGGATACTAGACAGCATAATGAAGCTTTGCATGCAATTCTGTTGGAGCCTTGAGAACCAAGAGAGCAATCCCGATAC AAAGGAACTGGAACGCATAACTGAGGAGTTCAATAAGAAATCAAATGCGTTGTACACCATACTGAGGAGTAGCAGGATAGCAGGGAGTCAACGAGCACCA TTTCTGAGACGTTTTCTCATGCGTCTCAACTTCAATTTATTCTTCGAGACAACCGCAATCGGCGTGCTTAATATTGTTAGGCCGAGCCCTGATGTTCCTT CATAG
AA sequence Show only first row Show all	>Lus10029779 pacid=23152111 polypeptide=Lus10029779 locus=Lus10029779.g ID=Lus10029779.BGIv1.0 annot-version=v1.0 MLHELLLALLGYTGDLVVDERDHQSSLGVNPPISDHRSFKLAPDLSFLHPSDRDLVGRIIALGFYYRELDRFASKARNLSCIRSSYASPPMPELSNSGTE KQQHSVYRRAIANGIVEILSIYRSAVLHIEQKLLSETVPILATLTQGLNKFFVLLPPLYELVLEIERENVRGGQLLTLLHKRCHCGVPELQTCIQRLLWH GHQVMYNQLASWMVYGILQDHHGEFFIRRLERKDEKHNSSDHETSERYRRLSTDDASLTDWHSGFETCLDMLPSYIPTNIADSILFAGKAIRILRNPSPA FLLKDPLDNQEVIKGTQKVQAFMGQFSIHDEPFMTTTHIGEELLPHSEADKIEVMLKDLKDSSEFHKRLFESAVGCIRAVAASHLWQLVVVRADLNGHLK ALKDYFLLAKGDFFQCFLEEGRHLMRLPPRQSTAEADLMVPFQLASMKTIGEEDIYFSRVSLRMASFGTSSKSFIDATSSSGLSSASSEMSLSGWDGIAL EYTVEWPLQLFFTQEVLSDYLKIFQYLLRLKRTQMELDKSWALGMHQDHKRFQKRCNKNMGSSLSQQRQQQFRPLWRVREHMAFLIRNLQFYIQVDVIES QWNVLQAHIQDSQDFTELVGFHQAYLSALISQSFVDIGSLSRILDSIMKLCMQFCWSLENQESNPDTKELERITEEFNKKSNALYTILRSSRIAGSQRAP FLRRFLMRLNFNLFFETTAIGVLNIVRPSPDVPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	0	1
AT5G27395			Mitochondrial inner membrane t...		Lus10035347 [exp]	1.0	0.8617
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	2.8	0.8373
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	3.2	0.8610
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	3.5	0.8514
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10007108 [exp]	8.7	0.8004
AT5G55610			unknown protein		Lus10016608 [exp]	10.0	0.8140
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	14.0	0.7648
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	21.7	0.8535
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	27.5	0.8171
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	30.1	0.8473

Compare expression of checked genes

Lus10029779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.