Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76900 574 / 0 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 550 / 0 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G43640 543 / 0 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 446 / 2e-155 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 414 / 3e-143 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 384 / 4e-131 TUB AtTLP6 tubby like protein 6 (.1.2) AT3G06380 367 / 5e-125 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 352 / 5e-119 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 227 / 2e-70 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 94 / 1e-21 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028579 [exp] 693 / 0 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 690 / 0 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 657 / 0 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 654 / 0 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10042807 [exp] 566 / 0 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10033977 [exp] 406 / 7e-140 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 400 / 3e-138 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10014299 [exp] 380 / 2e-129 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10041757 [exp] 379 / 3e-129 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192300 [exp] 692 / 0 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 683 / 0 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 670 / 0 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.007G023400 [exp] 425 / 3e-147 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.010G031000 [exp] 414 / 2e-143 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G121600 [exp] 415 / 4e-143 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.008G195200 [exp] 413 / 8e-143 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G228500 [exp] 402 / 5e-138 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 399 / 4e-137 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 353 / 2e-119 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029780 pacid=23152094 polypeptide=Lus10029780 locus=Lus10029780.g ID=Lus10029780.BGIv1.0 annot-version=v1.0 ATGTCATTCCGTAGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCCAAACGCAGTTTCGATGTAAGGCTGCCAGGTCATAATAGAGGCAAAT CGCATGGCTCGGTTACCGACTCGCATGACCAGCCGGTGGTTATCCAAAACAGCCGTTGGGCTAGCCTCCCGCCAGAGTTGTTGCATGATGTAATCAAGAG ATTAGAAGCAAGCGAGGGAACTTGGCCATCTCGTAAGCACGTTGTTGCATGTGCTGCGGTTTGCAAGTCGTGGAGGGAAATGTGCAAAGAAATCGTTAGA AATCCCGAATTCTCTGGGAAGATTACTTTCCCAGTTTCCTTGAAGCAGCCAGGGCACAGGGATGGGCCTATCCAGTGCTTCATTAAGAGAGACAAGTCTA AATTAACTTATCATCTTTTCCTTTGCCTTAGCCCAGCTTTGCTTGTTGAAAATGGGAAGTTCCTTCTCTCTGCTAAACGTACCAGAAGAACTACTTGCAC GGAGTATATAATCTCCATGGATGCTGATAATATATCAAAATCCAGTGGAACATATATTGGAAAGCTAAGGTCGAATTTCCTAGGTACGAGGTTTATAATC TACGACACTCAGCCGCCCTACAACAATGCTCAAATATCGCCTCCCGGTCGAAGCAAGAGATTCTATTCGAAAAAAGTGTCTCCAAAGCTCCCCACGGGAA ACTACAACATTTCTCAGATTTCATACGAATTGAACGTGCTCGGGACAAGAGGTCCACGTAGGATGCACTGCACCATGCATTCAATTCCCACCACGGCGCT CGAGTCTGGCGGTTCAGTCCCGGGCCAACCCAAGATGATCCTTCCGAGGTCCCTCGAGGAGTCGTTCAGAAGCGTGTCCCTCTCAAAATCAATCATCGAC AGCTCGAGCGAGTTTAGCAGCTCCCGGTTCTTCGATGTTGCTGGACCCCCTCATGAAGTGGGAGAAGAAGAAGAGGAAGGAAAGGAGAGAGCGCTGATTC TGAGGAACAAAGCACCAAGGTGGCATGAGCAGTTGCAGTGTTGGTGTCTGAACTTTCGTGGCAGAGTCACTGTAGCGTCTGTGAAGAATTTCCAGCTGAT AGCTGCGAATCAGCCTGCTGCTGCTGCTGCTGCTGCACCGACTCCATCAGCCCAACCTGCCCAGTCGGATCATGATAAGATCATATTACAGTTTGGGAAG GTGGGGAAGGATATGTTCACTATGGATTACCGGTATCCGCTGTCTGCGTTTCAAGCATTCGCAATATGCTTGAGCAGCTTTGACACTAAGCTGGCATGTG AATAG
AA sequence Show only first row Show all	>Lus10029780 pacid=23152094 polypeptide=Lus10029780 locus=Lus10029780.g ID=Lus10029780.BGIv1.0 annot-version=v1.0 MSFRSIVRDVRDGFGSLSKRSFDVRLPGHNRGKSHGSVTDSHDQPVVIQNSRWASLPPELLHDVIKRLEASEGTWPSRKHVVACAAVCKSWREMCKEIVR NPEFSGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISKSSGTYIGKLRSNFLGTRFII YDTQPPYNNAQISPPGRSKRFYSKKVSPKLPTGNYNISQISYELNVLGTRGPRRMHCTMHSIPTTALESGGSVPGQPKMILPRSLEESFRSVSLSKSIID SSSEFSSSRFFDVAGPPHEVGEEEEEGKERALILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANQPAAAAAAAPTPSAQPAQSDHDKIILQFGK VGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	0	1
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	1.4	0.8400
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	2.4	0.8437
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	3.0	0.8338
AT3G11240		ATATE2, ATE2	arginine-tRNA protein transfer...		Lus10040189 [exp]	4.5	0.8181
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	6.3	0.7330
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	6.3	0.8086
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10035801 [exp]	11.2	0.7494
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	13.0	0.7381
AT1G69630			F-box/RNI-like superfamily pro...		Lus10037440 [exp]	13.0	0.7481
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	13.0	0.7494

Compare expression of checked genes

Lus10029780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.