Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042808 [exp] 704 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067900 [exp] 558 / 0 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029781 pacid=23152158 polypeptide=Lus10029781 locus=Lus10029781.g ID=Lus10029781.BGIv1.0 annot-version=v1.0 ATGATGCTGGAGGCAAAGAGCCTGAGAAAAGCACTAATTCCTTCTACTCTAATTCCCAATCCTTCCCCTGGAAACATCCAGTCTTCCCGCCTTGCTCTCC ATGTTAACGACGATGGGTCTTCTTGTTGGGTATATATAGCTTCTGGGTGCCACATTTACAAGCTCCAGATTCCTTTGGAAGGCACTGCTATCGACAAAGG AAAAGAAAGCCTTCTTATTCCTATGCAGTCCGAGGTTGTGGACTGTTCAATAGTTAACCGATGCCCACACAGATCGGAAATTCAGAGTGTCATCCTGGGC GTTGTTGTTAGAATGTGCACCTTGACGGATTTGCAGTTGACGAAACCATCTTCAGGTCCTGGATATTTTGTGCTGGGAAGTGTGGATTCGTATGGCCATC TCATTGTGTCTAAGCTAGATGATAGTGGTAAAGATGTTGACAGACTTACTTATTCGGCACTCCCTCGAGATTCTGGAGTAGGAGAAGGTGGTTGGGCTGG ACTCAGTTTCAGTCCTACTCAATTCCTCACGGCAGCTGTAGCACGTGAGTTCTGCAAAACTGTGGACGTGTATGACCAAGACATTCATTTGCAGACATTA CATACACTCTGGTATCCGTCCTCTTTAAGCTTTATTCAAGGCTTGAGTAATGGCGAAGGGAGTTCGATATTAGCCGTCACGGAAGGATCCCAGTTGTCTA TTTGGGACTTGAGAATGAAAGAGAACAATGGTTGTCTACATCGAATTTGTGGTTCCATCGGAGACATCTTCTATGCAGTATGCAGCTCCTCAACTGGGAA TATTGCAGTGGGCGGTGCTGATCGCACAGTCACTGTTTATGATCCCCGTAGATGGAAGGCAGTCTCGAGATGGGTACATTGCTCAAAGTATGAGATAACT GGACTTGCATTCTCAACGATAAACCCCGACTATATATATATCCAAGGAGTGGATTATGAGGTATTATGTGGAAATTGGAAAGAGACTGAGAAGGTCTTCT CTTTTAGGGGGGATTCAAATTGGCTTGGTTTCCGCAAGTGTTTCAACAGGGATGTGGTAGGTGGATGGTGCGATTCGGGTAGCATATTTGTGGCTGATGT TAGAGGTAACCAGGAATGTGGACTCTATCCACCACATGTTTCTGCTGTAAATGGTTACTAG
AA sequence Show only first row Show all	>Lus10029781 pacid=23152158 polypeptide=Lus10029781 locus=Lus10029781.g ID=Lus10029781.BGIv1.0 annot-version=v1.0 MMLEAKSLRKALIPSTLIPNPSPGNIQSSRLALHVNDDGSSCWVYIASGCHIYKLQIPLEGTAIDKGKESLLIPMQSEVVDCSIVNRCPHRSEIQSVILG VVVRMCTLTDLQLTKPSSGPGYFVLGSVDSYGHLIVSKLDDSGKDVDRLTYSALPRDSGVGEGGWAGLSFSPTQFLTAAVAREFCKTVDVYDQDIHLQTL HTLWYPSSLSFIQGLSNGEGSSILAVTEGSQLSIWDLRMKENNGCLHRICGSIGDIFYAVCSSSTGNIAVGGADRTVTVYDPRRWKAVSRWVHCSKYEIT GLAFSTINPDYIYIQGVDYEVLCGNWKETEKVFSFRGDSNWLGFRKCFNRDVVGGWCDSGSIFVADVRGNQECGLYPPHVSAVNGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029781 [exp]	0	1
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	7.7	0.7781
					Lus10022119 [exp]	8.5	0.8134
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	17.3	0.8001
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	19.9	0.7842
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	22.2	0.7972
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	29.0	0.7463
					Lus10006003 [exp]	30.3	0.7722
AT5G17620			unknown protein		Lus10001340 [exp]	31.1	0.7584
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	33.4	0.7497
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	34.8	0.7668

Compare expression of checked genes

Lus10029781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.