Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74450 437 / 8e-153 Protein of unknown function (DUF793) (.1) AT1G18740 429 / 6e-150 Protein of unknown function (DUF793) (.1) AT1G43630 400 / 5e-138 Protein of unknown function (DUF793) (.1) AT1G63930 263 / 1e-84 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 208 / 9e-64 Protein of unknown function (DUF793) (.1) AT4G23530 194 / 5e-58 Protein of unknown function (DUF793) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042809 [exp] 729 / 0 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 607 / 0 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 602 / 0 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10028764 [exp] 264 / 8e-85 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1) Lus10017519 [exp] 136 / 4e-38 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067800 [exp] 528 / 0 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1) Potri.005G192600 [exp] 521 / 0 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1) Potri.001G099700 [exp] 287 / 4e-94 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1) Potri.003G132100 [exp] 285 / 2e-93 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10029782 pacid=23152009 polypeptide=Lus10029782 locus=Lus10029782.g ID=Lus10029782.BGIv1.0 annot-version=v1.0 ATGCCGGCAACGGATTACCAAGGGTCGTCGACGGCAGCTTTCGGGAGGGCAATTCTGAGTCTGCGCCGCGATCAGCTCCACTCCATGGATGGACACGGGC AGCACAGCCGTGAGAGCTCTGGCCTCGATGCTGAGCTGGAGACGTTTCAGAAACTGGTGGCGGAACGGTTCCACGATCTCTCCTCGGCTAGATCTGAGGA TTTAATTTCTCTCTCGTGGATCCAGAGGCTCCTCGATGCTTTCCTCTGTTGCCAGGAAGAGTTCAGGCAGCTTCTGTTCAGGAACAAATCGTACGTTGGC AAAGCGCCTCTGGATCGTTTGGTCCATGATTTTTACGAGCGGAGCTTGAAGGCCTTGGATATCTGCAACGCCGTACGCGACGGGATTGAGCAGATCAGGG AGTGGAAGAAGCTACTGGAGATTGTTCTCTGCGCATTGGATAATAACCAGCGTTCGGTTGGGGAAGGACATTTCCGTCGGGCGAAGAAGGCGTTGGTGGA TTTGTCGATATCCATGCTCGACGAGAAGGAGTTCACCGCCGCTGTGGCGCACAGAAACCGGTCTTTCGGGCGGAATCAAGGTTCGTCATCGAGGGAGAAC TCTCAGCGGGCGCATGGTCATTTTAGATCGTTGTCGTGGAGCGTTTCGAGGTCGTGGTCTGCTGCCAAGCAGCTTCAAGCGATCGGGAACAACGTCGTGG CGCCCAAAGCTAATGAGGTTATAGCTACTAGTGGTCTTGCCATTACCGTTTACACGATGAACTCTGTTTTGGTCTTTGTAATGTGGGCCCTAGTAGCGGC GATCCCATGCCAGGATAGGGGTTTGCAAATTCATTTCTCGATTCCCAGGCAGTTCTCTTGGGCTGCGCCACTGTCCTCTATGCACGAGAGGATTTTTGAC GAGTCGAGGAAGCGGGACAGGAGAAACGCTTGTGGATTGTTGAGGGAGATCTATCAGATGGACAAATGCTCCAGGGTACTGACCGATATGGCGGATTCTA TCCAGTTTCCATTAACAGAGGAGAAGCAGCAAGAAGTTAGGCAGAAAGTCCAGGAATTGGGGCAAATTTGTGAGGAATTTAAAGAGGGGTTAACGCCTCT AGAGAGGCAAGTGAGGGAGGTGTTCCATAGAATCGTTCATAGCCGGACGGAAGGGATTGATTCCTTAGGAAGAGGCAATCACAATGATTAA
AA sequence Show only first row Show all	>Lus10029782 pacid=23152009 polypeptide=Lus10029782 locus=Lus10029782.g ID=Lus10029782.BGIv1.0 annot-version=v1.0 MPATDYQGSSTAAFGRAILSLRRDQLHSMDGHGQHSRESSGLDAELETFQKLVAERFHDLSSARSEDLISLSWIQRLLDAFLCCQEEFRQLLFRNKSYVG KAPLDRLVHDFYERSLKALDICNAVRDGIEQIREWKKLLEIVLCALDNNQRSVGEGHFRRAKKALVDLSISMLDEKEFTAAVAHRNRSFGRNQGSSSREN SQRAHGHFRSLSWSVSRSWSAAKQLQAIGNNVVAPKANEVIATSGLAITVYTMNSVLVFVMWALVAAIPCQDRGLQIHFSIPRQFSWAAPLSSMHERIFD ESRKRDRRNACGLLREIYQMDKCSRVLTDMADSIQFPLTEEKQQEVRQKVQELGQICEEFKEGLTPLERQVREVFHRIVHSRTEGIDSLGRGNHND

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	0	1
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	3.0	0.9039
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	7.3	0.8610
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	7.5	0.8304
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	8.1	0.8558
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	8.4	0.8784
AT5G01710			methyltransferases (.1)		Lus10022682 [exp]	11.5	0.8509
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	11.5	0.8575
AT3G21570			unknown protein		Lus10012773 [exp]	15.7	0.8422
AT5G11070			unknown protein		Lus10001943 [exp]	22.5	0.8201
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	23.7	0.8192

Compare expression of checked genes

Lus10029782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.