Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21090 151 / 1e-44 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028576 [exp] 225 / 3e-73 AT1G21090 182 / 6e-57 Cupredoxin superfamily protein (.1) Lus10018856 [exp] 215 / 2e-69 AT1G21090 181 / 2e-56 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067600 [exp] 176 / 3e-54 AT1G21090 189 / 7e-60 Cupredoxin superfamily protein (.1) Potri.005G192800 [exp] 168 / 3e-51 AT1G21090 159 / 7e-48 Cupredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029783 pacid=23152012 polypeptide=Lus10029783 locus=Lus10029783.g ID=Lus10029783.BGIv1.0 annot-version=v1.0 ATGATGAACAACCGCCATACTATTCCTCTTCCTCTTCTGCAGCTTCTAGTCTTCTTTTCCCCATTGCTGCTCCTCACTCAGCCCTGCTATTCTTCAACCA CCATTCTCGTTGATGGCGTGTCTCCTTGGAACAACCCTCGTCTCTTCCTTGGAGACTCCATCATCTTCACGCACAAGTATGGCTACAATCTGTACATCTT CCAGACCCTCAGAGCCTTCGACCTCTGCAACATCACCCAAGCAACTCTTCTCACAAACCCCGCCACTCATTCTTACTCATGGCGCACATCACGCCCTGGC TTCTACTACTTCGCCTTCTCCAACGGCTCCTCCTGCTCCCAGAAGCTAGCCGTCAAGGTCTCCCTGCCGCCCGCCGCTGCATTCCCTCCAGCGGCGGCTC CAACTCCGTCGTTGCCGGAGCCGATTTCAGGAGGAGGAGTAGTGGCGTCATCACCTGCTTACCCTTGGCCGTTTAAGCCCCGAGAGAAGAGAGCTTCTAT TTGGGCGCCGGCGCCGGAGCCAACTGCAAGCAGCAGCGGTGGAGGAGAAGGAGGAGTCTATGGAAAGGCCAGGTCGCCGATGAGAGTTCCGAAAGTGTTG GCGGGTAAAGGTGGGGAGGAGACGGCGTTCATAAATAGTAATCCAGCGGTTGCTCTGCCGAGGGGAGAGGTGGATTCTGCCACTATTAGCCCTCAGTCAA CTTTTGCAACCAGCGGTTCCCATGATCAACAGATGAAGAGATGGAAGAAGAGTTGTTCAGTTGGAGGAGACGACATGGTTGGTGCTTGTGGTTTGATTCT CGTTGCTGTGTTTATGCAAGTGATGATCTGA
AA sequence Show only first row Show all	>Lus10029783 pacid=23152012 polypeptide=Lus10029783 locus=Lus10029783.g ID=Lus10029783.BGIv1.0 annot-version=v1.0 MMNNRHTIPLPLLQLLVFFSPLLLLTQPCYSSTTILVDGVSPWNNPRLFLGDSIIFTHKYGYNLYIFQTLRAFDLCNITQATLLTNPATHSYSWRTSRPG FYYFAFSNGSSCSQKLAVKVSLPPAAAFPPAAAPTPSLPEPISGGGVVASSPAYPWPFKPREKRASIWAPAPEPTASSSGGGEGGVYGKARSPMRVPKVL AGKGGEETAFINSNPAVALPRGEVDSATISPQSTFATSGSHDQQMKRWKKSCSVGGDDMVGACGLILVAVFMQVMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21090			Cupredoxin superfamily protein...		Lus10029783 [exp]	0	1
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	17.2	0.8594
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10020079 [exp]	19.6	0.7940
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	22.8	0.8240
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	22.9	0.8568
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	24.0	0.8573
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018147 [exp]	27.1	0.8566
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	36.3	0.8557
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10014989 [exp]	37.3	0.8311
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	38.0	0.8534
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	39.1	0.8542

Compare expression of checked genes

Lus10029783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.