Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44080 152 / 1e-43 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 111 / 2e-28 bZIP GBF4 G-box binding factor 4 (.1) AT2G41070 52 / 1e-07 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G56850 49 / 2e-06 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT1G45249 48 / 6e-06 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT1G49720 47 / 8e-06 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT2G36270 47 / 2e-05 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G34000 46 / 2e-05 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G44460 45 / 6e-05 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 45 / 7e-05 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042811 [exp] 323 / 8e-111 AT5G44080 86 / 2e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028575 [exp] 169 / 2e-50 AT5G44080 191 / 2e-59 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018857 [exp] 127 / 4e-35 AT5G44080 126 / 4e-35 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 63 / 7e-11 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 57 / 6e-09 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 57 / 6e-09 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008929 [exp] 55 / 3e-08 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 54 / 5e-08 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 54 / 9e-08 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192900 [exp] 219 / 2e-69 AT5G44080 142 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G067400 [exp] 193 / 4e-59 AT5G44080 141 / 2e-39 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.008G010800 [exp] 57 / 5e-09 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 54 / 4e-08 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 54 / 7e-08 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.005G243400 [exp] 52 / 1e-07 AT4G35900 117 / 4e-31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G090800 [exp] 52 / 2e-07 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 48 / 7e-06 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.001G220700 [exp] 47 / 1e-05 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.002G125400 [exp] 45 / 4e-05 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029784 pacid=23152122 polypeptide=Lus10029784 locus=Lus10029784.g ID=Lus10029784.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCGAAAGTGATGGCGTTCTCCAAACCGAAGAATTCGGATCTGGCTTCAACCACGTCGTCTAATTCTGCTACGCGATCGCGTCGCTTTTCTT CCTCTTCGTCATCATCTTCCGCCACTACAACTACTGTACACCATCGCTCCTCTCATCACACTTATATCGGCAACTCCTCGTCTTCCAACATGACTGTAGA CGGAATCTCGCACAACGTTTACTCCGCTCCGCCATCCGACTCCGCGCTCCTCGACGCTCCGTTAACCCTAATCGACTCCCCGACCCCTCCTCCTCTCGCC ACCGCAATCGATTCCAACGGCGGCGGCTGTGGTACGAATGATCAGGAAATGGCGACTGATGTTGTCCCTGCGCAGGGGAGCAAGACGGTTGATGAAATGT GGAGGGAGATTGTGTCCGGTAGGAAGGAATTGAAGGAAGAGCCTGACGAGATGATGACGCTTGAGGATTTTCTGGCCAAGGCTGGAGCGGTGGACGACGA GGATGAGGTGAAAATGCCGCAGCTCCATCCCGAGAGGTTGAGTGGGGGAATCTTCGGGTTTGATCCTGTGCCGATGCCGACGAATGCTATCAGTATGCTG GATAATGTAGAAGGTTCGATCATCGGGTTCGGTAATGGCGTGGAGTTGCCTCATGGCAGCGGAGAATTACGTGTTGAGAGAGGGAAGAGGGGTAGAGCGC CGGTGTTGGAACAGCTCGATAAAGCTGCCCAGCAGAGGCAAAAGAGGATGATTAAGAATCGCGAGTCAGCTGCCAGGTCCAGGGAGAGGAAGCAGGTGAC TGATGTTTTTCCTTTTGATGCAATGATGTTGAATTCGAATTATTGCCTTGATTTTGTCCGTTTAATAGTGGGAATCAACTCAATTTCGGTGATTCTGTTC TTGTGGTGGCTTCAGGCTTATCAAGTGGAATTGGAGTCCTTGGCAGTAAAGCTAGAGGAGGAGCATGAGCAGCTGCTAAAAGAGAAGGTACCTGCTTTTA TTCCCTCTTTATAG
AA sequence Show only first row Show all	>Lus10029784 pacid=23152122 polypeptide=Lus10029784 locus=Lus10029784.g ID=Lus10029784.BGIv1.0 annot-version=v1.0 MASSKVMAFSKPKNSDLASTTSSNSATRSRRFSSSSSSSSATTTTVHHRSSHHTYIGNSSSSNMTVDGISHNVYSAPPSDSALLDAPLTLIDSPTPPPLA TAIDSNGGGCGTNDQEMATDVVPAQGSKTVDEMWREIVSGRKELKEEPDEMMTLEDFLAKAGAVDDEDEVKMPQLHPERLSGGIFGFDPVPMPTNAISML DNVEGSIIGFGNGVELPHGSGELRVERGKRGRAPVLEQLDKAAQQRQKRMIKNRESAARSRERKQVTDVFPFDAMMLNSNYCLDFVRLIVGINSISVILF LWWLQAYQVELESLAVKLEEEHEQLLKEKVPAFIPSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	0	1
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	1.7	0.8744
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	2.0	0.8670
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	2.4	0.8624
AT5G60050			BTB/POZ domain-containing prot...		Lus10023336 [exp]	3.6	0.8218
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	4.0	0.8606
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	4.5	0.8573
AT5G13440			Ubiquinol-cytochrome C reducta...		Lus10028416 [exp]	4.7	0.7892
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	4.7	0.8281
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	4.9	0.8556
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	4.9	0.8513

Compare expression of checked genes

Lus10029784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.