Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56650 343 / 3e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT1G77090 82 / 2e-18 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G55330 43 / 7e-05 PPL1 PsbP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042812 [exp] 458 / 9e-166 AT3G56650 346 / 3e-121 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10018931 [exp] 89 / 1e-20 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 88 / 1e-20 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10030326 [exp] 41 / 0.0005 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034300 [exp] 366 / 1e-128 AT3G56650 372 / 1e-130 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.002G072400 [exp] 90 / 3e-21 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10029785 pacid=23152131 polypeptide=Lus10029785 locus=Lus10029785.g ID=Lus10029785.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCTTAAACCCACTCCGTCCAAATCCAATCCTCCGGCGACCATCCTCCGCCAAATCCCCAACCCACCAAACCCCATCGTTGCTGCTGCCCA CCAGAAGACAACTCCTCCAAAACCTGGCACTACTATCAACAACAATCATCAAATCCCCACCGGACTCCCTCGCCAAAGAAATCCCAGTAGGTAAATATCT GCCCCCCTCACAATCCGACCCATCATTCGTCCTCTTCAAGGCCTCCTCGAAAGACACACCTGCCCTCCGCGCCGGAAACGTGGAGCCCTACCAATTCGTG CTCCCGCCGTCTTGGAAGCAGACCAGAGTTGCCAACATTCTCTCCGGAAACTACTGTCAGCCCAAATGCGCCGAGCCCTGGGTTGAGGTGAAATTCGAGG ATGAGAAGCAAGGTAGAGTTCAAGTGGTGGCTTCCCCTTTGATTCGATTGACCAACAAACTCAACGCTACCATTGAAGACATTGGGTCCCCTGAAGAATT GATTGCTTCCCTTGGCCCTTTTGTTACTGGGAATTCTTACGATCCTGATGAGTTGGTTTACACCTCTGTTGAGAAGGACGGCGGCCTCACGTACTACAAA TATGAGTTGGAGACGCCGTATGCGCAGACGGGAGCACACAACCTGGCGAAGGCGACAGCGAAGGGGAGCACGGTGGTGTTGTTTGTGGCAAGTGCTACTG AGAAGCAATGGCAGACTTCTAAGAGAACTCTTCAATCCGTTCTTGATTCCTTCCACCTCTGA
AA sequence Show only first row Show all	>Lus10029785 pacid=23152131 polypeptide=Lus10029785 locus=Lus10029785.g ID=Lus10029785.BGIv1.0 annot-version=v1.0 MASSLNPLRPNPILRRPSSAKSPTHQTPSLLLPTRRQLLQNLALLSTTIIKSPPDSLAKEIPVGKYLPPSQSDPSFVLFKASSKDTPALRAGNVEPYQFV LPPSWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGRVQVVASPLIRLTNKLNATIEDIGSPEELIASLGPFVTGNSYDPDELVYTSVEKDGGLTYYK YELETPYAQTGAHNLAKATAKGSTVVLFVASATEKQWQTSKRTLQSVLDSFHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10029785 [exp]	0	1
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	1.0	0.9678
AT3G23760			unknown protein		Lus10032527 [exp]	1.7	0.9379
					Lus10005791 [exp]	2.0	0.9606
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	5.0	0.9263
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	5.1	0.8979
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	6.9	0.9271
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	8.5	0.9254
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	12.0	0.9147
AT3G04550			unknown protein		Lus10022014 [exp]	12.6	0.8889
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	13.4	0.9184

Compare expression of checked genes

Lus10029785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.