Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 388 / 2e-130 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48300 380 / 1e-127 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G48290 380 / 2e-127 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48270 378 / 9e-127 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 370 / 2e-123 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26310 370 / 2e-123 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48320 369 / 3e-123 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G26300 369 / 4e-123 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 363 / 5e-121 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT2G30770 357 / 3e-118 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019459 [exp] 421 / 4e-143 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10043313 [exp] 416 / 5e-141 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 409 / 2e-138 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 402 / 1e-135 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016601 [exp] 400 / 5e-135 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10043308 [exp] 399 / 1e-134 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 393 / 4e-132 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029035 [exp] 392 / 1e-131 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 379 / 9e-127 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137600 [exp] 493 / 1e-171 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089600 [exp] 474 / 6e-164 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137400 [exp] 451 / 7e-156 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085600 [exp] 452 / 2e-155 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G085800 [exp] 423 / 5e-144 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 414 / 1e-140 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 410 / 6e-139 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 403 / 2e-136 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.008G223500 [exp] 385 / 4e-129 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 384 / 7e-129 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10029787 pacid=23159829 polypeptide=Lus10029787 locus=Lus10029787.g ID=Lus10029787.BGIv1.0 annot-version=v1.0 ATGGAAATCCCATTTCTACTCTCCATCCTACTTTATTTTCCCATCTTCCTCCTCGTCATCATCAAAATCAAGAAGAACAATAACAACAATACCAACACTT CCCCAAGTCCGCCGTCCCCTCCGGCGCTTCCACTCATCGGAAACCTCCACCAACTAGGCCGCCGGCCACACCGCTCCTTCCAGTCCCTAGCAAAGAAACA CGGGCCCCTCATGCTCCTCCAACTGGGCCAGGTCCCGACTCTAGTAATCTCATCTCCAGAAATGGCCCGAGAAGCCACAAAGACCCACGACCTTGTCTTC GCGGGCCGGCCCAGGCCCATATCAGTCGAAATCTTTCTAAACGGCGGCGACGACGTCGCTTTCTCCTCCTACGGCGACTACTGGCGACAAGCCAGAAAGC TCTGCGTCATCGAGCTCCTCAGCCAGAACAGAGTCAATACCTTCCAATCAGTGCGACGGGAGGAGACGACAACGATGGTGGAGATCCTCCGACTCAAATC CGGAACTCCCGTAGACCTTTCCGCGACGATCCTCGCCGCGGTGAACAACATAGTGGCGAGGTGCGTCCTGGGGCGGCGGTGCGAAGGCGGCGGAGTGAAG TTAGGGTTAGGGGAGCTGACGAAGAGGATTGGAAATCAGTTCGCGGAGTTCAGCGCCGGGGACTGGCTGCCGTGGATGGCGTGGGCTGACGTGGCGAGCG GGCTGATCGGGAGGATGAAGGAGACGTTTCGGGCGACGGATGAGTATTTGGATGAGGTGATTGAGGAGCATAAGGCGGTGGCGGTGGCGGATGATAAGAA GGAGGATTTTGTACATATTATGCTTCGGTTGCAGAAGGAAGGAGGATTGGAATTCGATCTCAGCCTCGGTAACATCAAAGCCATTCTAGTGGATATGATG GTGGGAGGAACCGATACGACATCCACAACGGTGGAATGGATAATGACGGAGCTCGTGAAAAACCCACTAAAGCTCCAAAAAGCCCAAGAAGAGATCCGCA GGGTCGTGGGCTTAAAGCCCGAGATCGACCACGAAGACCTGGCCCAAATGCACTACCTCAAACTCATTTTCAAAGAGACCCTCCGACTATACCCGCCAAT CGTCTTCCTCCTCCCGCGAGAAACGCTAGCCTCCGCCGACGTCGCCGGGTTCAGAATCCCCGCCGGAGCCCGTGTCCTGATCAACACGTGGGCCATCCAC AGAGACCCTGACGAGTGGGAAAATCCCGACGAGTTCATCCCGGAGCGGTTCGAGAACAACCCGATTGACTACAAGGGGAGGGATTTCCAGTACATCCCGT TCGGGGCGGGTCGGAGGGGCTGCCCTGGGATATCGTTCGGGACTGTGGCGACTGAGATCGTGGTGGCCAATCTGTTGTACTGGTTCGACTGGGAGTTTCC GGAAGGGATGAGCTGTAAGGATTTGGACATGGAGGAGGTTTATGCTCTCACAATTCATAAGGAGAAGCCGCTAATACTCGTGCCTGTAATTCATCGCTTC TGA
AA sequence Show only first row Show all	>Lus10029787 pacid=23159829 polypeptide=Lus10029787 locus=Lus10029787.g ID=Lus10029787.BGIv1.0 annot-version=v1.0 MEIPFLLSILLYFPIFLLVIIKIKKNNNNNTNTSPSPPSPPALPLIGNLHQLGRRPHRSFQSLAKKHGPLMLLQLGQVPTLVISSPEMAREATKTHDLVF AGRPRPISVEIFLNGGDDVAFSSYGDYWRQARKLCVIELLSQNRVNTFQSVRREETTTMVEILRLKSGTPVDLSATILAAVNNIVARCVLGRRCEGGGVK LGLGELTKRIGNQFAEFSAGDWLPWMAWADVASGLIGRMKETFRATDEYLDEVIEEHKAVAVADDKKEDFVHIMLRLQKEGGLEFDLSLGNIKAILVDMM VGGTDTTSTTVEWIMTELVKNPLKLQKAQEEIRRVVGLKPEIDHEDLAQMHYLKLIFKETLRLYPPIVFLLPRETLASADVAGFRIPAGARVLINTWAIH RDPDEWENPDEFIPERFENNPIDYKGRDFQYIPFGAGRRGCPGISFGTVATEIVVANLLYWFDWEFPEGMSCKDLDMEEVYALTIHKEKPLILVPVIHRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	2.0	0.9255
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	2.4	0.9139
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	2.6	0.9098
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	2.8	0.9315
AT3G16330			unknown protein		Lus10038274 [exp]	2.8	0.9348
					Lus10040811 [exp]	3.5	0.9301
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	3.9	0.9153
AT1G52140			unknown protein		Lus10025828 [exp]	8.8	0.9022
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	10.2	0.9084
					Lus10015565 [exp]	11.0	0.9032

Compare expression of checked genes

Lus10029787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.