Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59110 624 / 0 Protein kinase superfamily protein (.1) AT2G42960 612 / 0 Protein kinase superfamily protein (.1) AT1G56720 518 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09440 497 / 2e-173 Protein kinase superfamily protein (.1) AT5G18500 485 / 2e-168 Protein kinase superfamily protein (.1.2) AT3G17420 461 / 1e-159 GPK1 glyoxysomal protein kinase 1 (.1) AT4G01330 420 / 2e-143 Protein kinase superfamily protein (.1.2) AT1G01540 419 / 5e-143 Protein kinase superfamily protein (.1.2) AT4G02630 404 / 7e-137 Protein kinase superfamily protein (.1) AT4G34500 396 / 1e-134 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020747 [exp] 816 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 712 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 711 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 521 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036863 [exp] 440 / 7e-151 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018722 [exp] 429 / 4e-146 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 426 / 9e-145 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 420 / 1e-142 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 414 / 9e-141 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059000 [exp] 679 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 677 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 577 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 558 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 525 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G214200 [exp] 520 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 430 / 1e-146 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 413 / 2e-140 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 397 / 2e-134 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 393 / 1e-132 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029788 pacid=23159632 polypeptide=Lus10029788 locus=Lus10029788.g ID=Lus10029788.BGIv1.0 annot-version=v1.0 ATGTCGTTAAACGCCGAGTTAACCAAGAAGACATCACTTCTTGGTTTGAAACTCTATGTTCTAATTGGGATATCAGTAGGTGCATTCATAGTTTTGATTC TTTGCATCCTGTCAGTATGGTCTTTTCGCCGAAGATCCAGGAGATCAATGGACAGCATATCTCAGATACCGAATGTTTCAAAGGATATCAGGGTCGACAG GGTCGGAACACAGACATACAATAACCAGCAGGAAAGCTTATTCCTCACTATTAATGATAAATCAAGCGACAAAAATTCAGGGAAGTTGATTAGCAACAAC TTGAGGATGAGCAAGTCTAGCGACCCTGACAATGTCAGTCAATGCAGCTCGGTTTACCATAACGAGAAAGGATTCAGCTCCCTGTCCGGTGAAGAAGGAG GAAGCTCCGGAGCTATGAAGAAGCATCGGCAGCAATCCTCGTATGTGACTGCCTCCCCGTTGATTGGCTTACCGGAATTTTCGCACTTGGGATGGGGTCA TTGGTTTACCCTTAGGGATCTTGAGTTTGCGACGGATCGTTTCGCAGAAGAGAATGTGATTGGTGTGGGTGGATACGGCGTTGTTTATAAGGGCAAGCTG ATTAATGGAACTGAGTTAGCCGTGAAGAAAATTCTGAACAATGTGGGACAGGCGGAGAAGGAATTTCGAGTTGAAGTGGAAGCCATTGGTCATGTTCGGC ATAAGAATCTTGTCCGGCTTCTTGGATACTGTATGGAAGGGGTTCACAGGATGCTTGTGTACGAATATGTGAACAACGGCAACTTAGAGCAGTGGCTTCA TGGCGAAATGCGCCACCACGGTACCCTCACGTGGGAGGCTCGGATGAAGGTTCTTCTCGGGACTGCAAAGGCGCTTGCTTATTTACACGAGGCAATAGAG CCGAAAGTTGTGCACCGTGACATAAAGTCGAGCAACATCTTGATTGATAGTGAGTTTAATTGCAAAGTGTCCGATTTCGGATTAGCAAAGCTTTTAGATT CTGGAGAGAGTCACATTACTACAAGAGTTATGGGTACATTTGGGTATGTAGCACCCGAATATGCGAATACCGGCATGTTGAATGAGAAGAGTGACATTTA CAGCTTCGGAGTCCTGCTTCTAGAAGCAGTCACTGGAAGAGATCCCGTTGATTATGAGAGGCCTGCCAATGAGGTTAACCTTGTGGAGTGGCTTAAGATG ATGGTTGGCACGAAAAGAGCCGATGAAGTTGTGGATCCAAGTCTTGAAGCTAAACCTCCGACTCGTGCTCTAAAACGAGCTCTCTTGGTTGCATTGCGGT GCGTTGATCCTGATTCGGAGAAGAGACCGAAAATGAGTCAGGTCGTGCGGATGCTAGAAACTGAAGAGTACCCTTACCGTGAGGACCGGAGAAACCGGAA GAGCCGTACAGCAAGCATGGAGATCGAATCGATGAAGGAATCAACGGAAATGGAAAGCAAAGTAGCAGAGTCATCAGTAAGCGAGGTAGTATCTGGAAAA TCTAAAGGACAGGAGAATTAA
AA sequence Show only first row Show all	>Lus10029788 pacid=23159632 polypeptide=Lus10029788 locus=Lus10029788.g ID=Lus10029788.BGIv1.0 annot-version=v1.0 MSLNAELTKKTSLLGLKLYVLIGISVGAFIVLILCILSVWSFRRRSRRSMDSISQIPNVSKDIRVDRVGTQTYNNQQESLFLTINDKSSDKNSGKLISNN LRMSKSSDPDNVSQCSSVYHNEKGFSSLSGEEGGSSGAMKKHRQQSSYVTASPLIGLPEFSHLGWGHWFTLRDLEFATDRFAEENVIGVGGYGVVYKGKL INGTELAVKKILNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGVHRMLVYEYVNNGNLEQWLHGEMRHHGTLTWEARMKVLLGTAKALAYLHEAIE PKVVHRDIKSSNILIDSEFNCKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGMLNEKSDIYSFGVLLLEAVTGRDPVDYERPANEVNLVEWLKM MVGTKRADEVVDPSLEAKPPTRALKRALLVALRCVDPDSEKRPKMSQVVRMLETEEYPYREDRRNRKSRTASMEIESMKESTEMESKVAESSVSEVVSGK SKGQEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	0	1
AT3G59110			Protein kinase superfamily pro...		Lus10020747 [exp]	1.0	0.9634
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	4.9	0.9221
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	5.1	0.9358
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	5.6	0.8970
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	8.1	0.9352
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	9.4	0.9314
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	9.4	0.9066
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	9.9	0.9110
					Lus10005454 [exp]	10.7	0.9066
AT1G09645			unknown protein		Lus10037343 [exp]	10.8	0.8549

Compare expression of checked genes

Lus10029788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.