Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06400 373 / 3e-133 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G16920 355 / 3e-126 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G45750 350 / 3e-124 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18800 347 / 3e-123 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G60860 330 / 4e-116 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 329 / 8e-116 AtRABA1g RAB GTPase homolog A1G (.1) AT4G18430 325 / 3e-114 AtRABA1e RAB GTPase homolog A1E (.1) AT1G28550 323 / 2e-113 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 317 / 5e-111 ArRABA1h RAB GTPase homolog A1H (.1) AT1G09630 295 / 1e-102 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020746 [exp] 442 / 1e-160 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029253 [exp] 350 / 6e-124 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 344 / 7e-122 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10017679 [exp] 333 / 1e-117 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 333 / 2e-117 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10015297 [exp] 325 / 3e-114 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 322 / 4e-113 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 320 / 3e-112 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10039895 [exp] 305 / 3e-106 AT5G60860 397 / 5e-143 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070300 [exp] 364 / 1e-129 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 360 / 5e-128 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.001G374000 [exp] 342 / 7e-121 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.013G123600 [exp] 328 / 2e-115 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 327 / 3e-115 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.011G061300 [exp] 327 / 5e-115 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.003G004100 [exp] 293 / 8e-102 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 291 / 8e-101 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.016G000400 [exp] 288 / 1e-99 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G061300 [exp] 287 / 2e-99 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10029789 pacid=23159751 polypeptide=Lus10029789 locus=Lus10029789.g ID=Lus10029789.BGIv1.0 annot-version=v1.0 ATGGCTGGCTACCGACCTGAAGAAGACTACGATTACTTGCTCAAGCTCGTTCTGATCGGCGATTCCGGTGTCGGCAAATCCAACTTGCTCTCCAGGTTCA CCAAGAACGAGTTCAATCTCGAGTCCAAGTCCACTATCGGGGTCGAGTTCGCCACCAAGAGCATGAACCTCGATGGCAAGGTCATCAAGGCTCAGATTTG GGACACCGCTGGCCAAGAAAGGTACCGCGCCATAACAAGCGCATACTACAGAGGAGCGGTCGGTGCTTTACTCGTCTACGACGTGACTCGCCGCTCAACA TTCGAAAACGTGGCGAGGTGGCTGAAAGAGTTGAGGGAGCACACCGACCCCAACATCGTCGTCATGCTCATAGGCAACAAATCAGATCTCAGGCACCTGG TAGCTGTCCAGACCGAGGATGCGAAAGCATATGCAGAGAGGGAGTCCATGTACTTAATGGAGACATCAGCTCTCACCGCAACAAACGTGGAGAGTGCCTT CACCGAAGTCATGACGCAGATATACAAGATCGTGAGCAAGAGGGCTGTCGATGGAACCAATGACGGTACGACAGGAGTACCTCTGAAGGGAGAGACCATC AACGTGAAGCAGGAAGGTTCTGTTCTCAAGAGAATGGGGTGCTGTTCTTAG
AA sequence Show only first row Show all	>Lus10029789 pacid=23159751 polypeptide=Lus10029789 locus=Lus10029789.g ID=Lus10029789.BGIv1.0 annot-version=v1.0 MAGYRPEEDYDYLLKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSMNLDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRST FENVARWLKELREHTDPNIVVMLIGNKSDLRHLVAVQTEDAKAYAERESMYLMETSALTATNVESAFTEVMTQIYKIVSKRAVDGTNDGTTGVPLKGETI NVKQEGSVLKRMGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	1.0	0.9111
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	2.0	0.8992
AT1G07080			Thioredoxin superfamily protei...		Lus10026384 [exp]	3.9	0.8839
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	4.6	0.8931
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	5.7	0.8895
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	7.3	0.8481
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	10.5	0.8695
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	12.0	0.8680
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	13.0	0.8817
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	13.4	0.8457

Compare expression of checked genes

Lus10029789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.