Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02140 247 / 7e-86 MAGO, HAP1, MEE63 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020745 [exp] 275 / 3e-96 AT1G02140 248 / 3e-85 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G049700 [exp] 256 / 3e-89 AT1G02140 280 / 1e-98 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1) Potri.002G138500 [exp] 253 / 5e-88 AT1G02140 281 / 7e-99 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02792 [flax] [poplar] Mago_nashi Mago nashi protein
Representative CDS sequence Show only first row Show all	>Lus10029791 pacid=23159827 polypeptide=Lus10029791 locus=Lus10029791.g ID=Lus10029791.BGIv1.0 annot-version=v1.0 ATGTCGACGGAGGAAGAAGGAGAGTTCTACCTGAGGTATTACGTAGGCCACAAGGGGAAATTCGGTCATGAGTTCCTGGAGTTCGAGTTCAGGCCCGACG GCAAGCTCCGATACGCCAATAACTCCAACTACAAGAACGACACCATGATTCGTAAGGAGGTCTTCCTCTCCCCCGCCGTTCTCAAAGAGTGCCGCCGCAT CATCTCCGACAGCGAGATAATGAAGGAAGACGATAACAACTGGCCGGAGCCTGACAGGGTTGGGCGACAGGAGCTTGAGATTGTGATGGGAAACGAACAC ATTTCCTTCACTACCTCTAAAATTGGATCGCTCGTTGATGTACAGAGCAGTAAGGACCCAGAAGGTCTTCGCATCTTCTACTACCTTGTTCAGCTAGGGT TCTACATCTGA
AA sequence Show only first row Show all	>Lus10029791 pacid=23159827 polypeptide=Lus10029791 locus=Lus10029791.g ID=Lus10029791.BGIv1.0 annot-version=v1.0 MSTEEEGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLSPAVLKECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEH ISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQLGFYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	0	1
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	3.0	0.9294
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10011507 [exp]	4.5	0.8806
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	7.7	0.8727
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	9.6	0.9038
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10021862 [exp]	12.1	0.8834
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	12.4	0.8487
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	12.8	0.8480
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	17.3	0.8839
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	19.0	0.8810
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	19.7	0.8925

Compare expression of checked genes

Lus10029791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.