Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44760 548 / 0 Domain of unknown function (DUF3598) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020744 [exp] 550 / 0 AT2G44760 389 / 6e-134 Domain of unknown function (DUF3598) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138600 [exp] 580 / 0 AT2G44760 578 / 0.0 Domain of unknown function (DUF3598) (.1) Potri.004G207400 [exp] 59 / 2e-09 AT4G38225 397 / 8e-138 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF12204 [flax] [poplar] DUF3598 Domain of unknown function (DUF3598)
Representative CDS sequence Show only first row Show all	>Lus10029792 pacid=23159633 polypeptide=Lus10029792 locus=Lus10029792.g ID=Lus10029792.BGIv1.0 annot-version=v1.0 ATGCTATCGCCACCATCAGCATGTCTCCATCTCTGCAACTGCAGCAATACCTTGGCCATCCCTCGTTTAATCTCCGGACAGAGCTTCCGATTGGCCACCA CCACAGCACAAAACCTCCACCTGGACTCCGAATCCCCCAATCGGACGAGGAGAAGAGTCCTGACGAATTGCCAGAGCAAACGCCCGGACCGCCGGAGCAC GAAATTCCGAGATGGAGGAGGCGCGAAACAGAAGGCCAACAAGAACGAAAACATTTGGAGCGTCGACAACGAATTCGCGGAATCGAAGACTGAGAGAGCG AAACATCGGAGGGTAAAAAAAGGATCGAGGGGGAGCAGCAAGAGGAGCAAAGGCGGCAGAATTATCGTCTCCGGTGCGATGCTTATGGAGGTCGAGACTG TTCTCCAGACTCAGGAACCTGTGATTAGGCCTGTGTGGAGTACGTTTGCAAGTAGTTTGAGCGGTATATGGAAGGGCATAGGTGCAGTGTTTTCACCCAT TACGGGTGAAATGGAGCCTATTGACATTGGGAAGAAAGGAGAGGAGTTGTATGACTGCTACACTCTTTCCCGCATTGAAGCTGTGCCATCAGAGCTATCC AAAGGGCAGGCATCTCGAATCCAGCGAAAGATAAAATGGGCGACATTGAATCCGCACGGTGAAGCATCATCACCGAGCGGTATTGGTGGTGTAGGAAAGC TGGTTTTGCCTAAGTTCGAGTCTTTTGATTTTGAATCGAGTGATGTTATGGAAGAAGATGTCATGGGTGATGAACCAGGTCTTGTTTTCTTCGAGGACGG ATCATATTCACGAGGTCCGCTCAGCATCCCGGTTGGTGAAGTTGATGATTCCACATATTTCATGTCCCCAACTTTTAAGTTTGAACAGTGTCTGGTTAAA GGTTGCCACAAAAGATTGCGCATTGTTCACACGATCGAGTTTAGTCAAGGGGGTGCAGACGTTCAGATACTAAGAGTTGCTGTGTACGAAGAACAGTGGG CAAGTCCCGTGAATCTTGATGACCTAAGCGATATGGACTTCAACTCGGAGCCATTCTCGCAGCGCAGGAGGACTCGGGCATCGGAGCTCGCAGGATCCTG GAAGGTATTCGAAATAAATGCTACTCCAATTTACGGCCAGGACGAGGAGATGACAGACATCAACAATGCCTCGCCGTATGTGTACCTCTGCAACGAGACA TTGAAGAAGAGGAGCTTGCCTGGAAATCCCGTTCACTTCCGTGAAGAAGAAATGGTTGATACCCGGGATGTGACGATGCTTTGGCTCCCAGGTGGAGTAA CTGCATATGTAGATGTCAACAAGGAAGGCGTTCTTTGCATTGGCGTCGGCTGGTACTCTGATGAAGGTGTAAACCTAGTAATGGAGAGGGATTACGAATT GGATGGAAACTTGAGGGAAGTTCGCTCCAAAACTGAAGTGAAGCGACGGTGGTCTAATCCGTGA
AA sequence Show only first row Show all	>Lus10029792 pacid=23159633 polypeptide=Lus10029792 locus=Lus10029792.g ID=Lus10029792.BGIv1.0 annot-version=v1.0 MLSPPSACLHLCNCSNTLAIPRLISGQSFRLATTTAQNLHLDSESPNRTRRRVLTNCQSKRPDRRSTKFRDGGGAKQKANKNENIWSVDNEFAESKTERA KHRRVKKGSRGSSKRSKGGRIIVSGAMLMEVETVLQTQEPVIRPVWSTFASSLSGIWKGIGAVFSPITGEMEPIDIGKKGEELYDCYTLSRIEAVPSELS KGQASRIQRKIKWATLNPHGEASSPSGIGGVGKLVLPKFESFDFESSDVMEEDVMGDEPGLVFFEDGSYSRGPLSIPVGEVDDSTYFMSPTFKFEQCLVK GCHKRLRIVHTIEFSQGGADVQILRVAVYEEQWASPVNLDDLSDMDFNSEPFSQRRRTRASELAGSWKVFEINATPIYGQDEEMTDINNASPYVYLCNET LKKRSLPGNPVHFREEEMVDTRDVTMLWLPGGVTAYVDVNKEGVLCIGVGWYSDEGVNLVMERDYELDGNLREVRSKTEVKRRWSNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	2.4	0.8904
AT1G54520			unknown protein		Lus10015939 [exp]	5.7	0.9095
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	6.8	0.8453
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	7.6	0.9061
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	9.2	0.8676
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	10.9	0.8779
AT2G39210			Major facilitator superfamily ...		Lus10033790 [exp]	11.6	0.8381
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10036431 [exp]	13.0	0.8644
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	14.5	0.8481
AT4G13220			unknown protein		Lus10022819 [exp]	17.3	0.8786

Compare expression of checked genes

Lus10029792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.