Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04840 740 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 462 / 9e-154 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 451 / 1e-150 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 446 / 7e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 447 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 445 / 1e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 446 / 4e-148 MEF22 mitochondrial editing factor 22 (.1) AT4G37380 440 / 1e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 435 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 426 / 1e-139 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020743 [exp] 1303 / 0 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 492 / 5e-166 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 465 / 2e-156 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 465 / 7e-156 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 456 / 9e-153 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 456 / 1e-151 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 452 / 4e-151 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 449 / 1e-149 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 436 / 8e-145 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316500 [exp] 897 / 0 AT1G04840 728 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 509 / 6e-173 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 501 / 5e-170 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 499 / 5e-169 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 486 / 1e-164 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 476 / 5e-160 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 469 / 2e-156 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 466 / 2e-155 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 463 / 2e-155 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 463 / 2e-155 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029793 pacid=23159842 polypeptide=Lus10029793 locus=Lus10029793.g ID=Lus10029793.BGIv1.0 annot-version=v1.0 ATGAAATCTCTTTCTGCTCTATTCAAACAAACACCCATTGTTCCCGCCAAACAGATTTTTCCTTCCACCCCTACTCATTTACCCTCTTGTCCAATCCCAT CTGAACCCTACCTCGTATCTCTAATCCATGATTCTACAACCGTCCTCCATCTCCACCAAATCCATGCCCAGATCTTCCGACAGGGTTTCTCCAAGAGCAG CCATCTGGCCACCCAGATGGTATCTTCTTCGTCTTTGCACAAAGCCATTGACTATGCCATCTCCATATTCTGCCAATACCATCCCAAAAACGTGTTCTTG TTCAATTCCCTCATACGTGGGCTCGAGAGAAATACCAGGTTCGAGATGGCATTGTCCCATTTTGTTCTCATGTTGAAGTTGGATATTAGGCCTGACAGGA TGACCTACCCGTTTGTTCTCAAATCAGCCGCACACTTGTTCTTCTCAAGGCTTGCTTCGGAGCTACACTGTATGATCTTGAAGTGTGGGGCTCAGTTTGA TTCCTTCGTTGGTGTATCTCTTGTCGACATGTATGTGAAAGTTGAAGAACTAGAGTCATCACTAAAGGTGTTCGATGAAAGTCCTCAGAGATTTGACTGT GGGGGCACGTTGCTGTGGAACGTAGTGATCAATGGTTGTTGTAAGATGGGGCGTATGGGTAAGGCCATGGAGCTTTTCAATACTATGCCAGGGAGGGATA CTGGGTCATGGAACAGTTTGATTAATGGGTTTTTGAGAGCAGGGGAAGTGGAAAAAGCCGATGCACTTTTTTGTCGGATGCCAGAAAAAAATGTAGTATC TTGGACCACAATGGTTAATGGGTTTTCTCAGAATGGAGACCATGAAAAGGCGCTATCAGTTTTCTCAAGGATGTTGGAGGAGGATGTGAGACCAAATGAT TACACTGTTGTTTCTGCACTTTCTGCTTGTGCAAAGACTGGGGCACTTGAAGGTGGATTGAGGATACACAAGTATATTACAAATAATTTGTTCAAGTTAA ATGCAACAATTGGGACTGCTTTGGTAGACATGTATGCAAAATGCGGCGATATAGATTCCGCAAGTCAGGTCTTCAACAATACAAAGGAGAGGGACATACT TACATGGAGTGTTATGATATGGGGCTGGGCACTCCATGGACGTTTCGAGCAAGCTGCTCTATGCTTCAAGCAGCTGATGCGTTCAGGTATAAAGCCTGAT GAAGTTGTCTTTCTTGCGATGTTAACTGCTTGCGTGCATGCAGGCAAAGTCGATCTTGGGCTTAATTTCTTCAACAGCATGAGGCTTGACTACCGTATTG AACCCTCCATGAAACACTATTCTTTAGTCGTTGACCTGTTAGGTAGGGCAGGACGGCTGAACGAAGCTCTCAACTTCATCCAGAAAATGCCCATAAATGC AGACCTCGTGATCTGGGGAGCTCTATTCTGTGCTTGTAGGGCCCACAAAAATGTCGAATTAGCAGAGCTTTCTGCGAAAAAGCTCCTAGCGCTTGAACCG AAACACGCCGGCAGTTACGCATTTTTGTCGAATGCTTATGCTGCCGTTGGGCGATGGGAAGATTCAGAGAGAGTGAGAACTTTAATGCTGGACAAAGGCA TTGGAAAAGATCCCGGGTGGAGTTACATCGAGTTGGATGGACTGGTTCATAGATTTGTGGCTGGTGATAATGCTCATAAGGATGCTAAAGAAATCCAAGT GAAACTGGAGGAGATAATGTCGGGTGCAAGACGGCAAGGATACACACCTGGAACTGAATGGGTGCTTCATAACATTGAAGAAGAAGAGAAGGAAGATGCA CTGGGGAGTCACAGTGAAAAGTTAGCGCTTGCTTTTGCGTTGATCCGAAGTTCGGCAAAAGCGACCATTAGGATTGTGAAGAATCTTAGGATCTGTGGTG ATTGCCACTCTTTGATGAAGTACGCTAGCATTATGAGCCGGAGGGAGATTGTAGTGAGAGATATGAAACGTTTCCATCATTTCAAAGATGGAACTTGCTC ATGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10029793 pacid=23159842 polypeptide=Lus10029793 locus=Lus10029793.g ID=Lus10029793.BGIv1.0 annot-version=v1.0 MKSLSALFKQTPIVPAKQIFPSTPTHLPSCPIPSEPYLVSLIHDSTTVLHLHQIHAQIFRQGFSKSSHLATQMVSSSSLHKAIDYAISIFCQYHPKNVFL FNSLIRGLERNTRFEMALSHFVLMLKLDIRPDRMTYPFVLKSAAHLFFSRLASELHCMILKCGAQFDSFVGVSLVDMYVKVEELESSLKVFDESPQRFDC GGTLLWNVVINGCCKMGRMGKAMELFNTMPGRDTGSWNSLINGFLRAGEVEKADALFCRMPEKNVVSWTTMVNGFSQNGDHEKALSVFSRMLEEDVRPND YTVVSALSACAKTGALEGGLRIHKYITNNLFKLNATIGTALVDMYAKCGDIDSASQVFNNTKERDILTWSVMIWGWALHGRFEQAALCFKQLMRSGIKPD EVVFLAMLTACVHAGKVDLGLNFFNSMRLDYRIEPSMKHYSLVVDLLGRAGRLNEALNFIQKMPINADLVIWGALFCACRAHKNVELAELSAKKLLALEP KHAGSYAFLSNAYAAVGRWEDSERVRTLMLDKGIGKDPGWSYIELDGLVHRFVAGDNAHKDAKEIQVKLEEIMSGARRQGYTPGTEWVLHNIEEEEKEDA LGSHSEKLALAFALIRSSAKATIRIVKNLRICGDCHSLMKYASIMSRREIVVRDMKRFHHFKDGTCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10029793 [exp]	0	1
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	14.2	0.8021
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	17.4	0.7719
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	19.0	0.7413
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	25.5	0.7631
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	28.1	0.7586
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	38.7	0.7575
AT3G01160			unknown protein		Lus10028412 [exp]	47.7	0.7224
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10029596 [exp]	50.1	0.7418
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	52.8	0.6640
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10025277 [exp]	53.4	0.7208

Compare expression of checked genes

Lus10029793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.