Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72200 172 / 6e-49 RING/U-box superfamily protein (.1) AT2G35000 170 / 2e-48 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT3G05200 157 / 2e-43 ATL6 RING/U-box superfamily protein (.1) AT4G09120 155 / 3e-43 RING/U-box superfamily protein (.1) AT5G27420 155 / 5e-43 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT1G22500 155 / 8e-43 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G09130 153 / 2e-42 RING/U-box superfamily protein (.1) AT1G35330 152 / 4e-42 RING/U-box superfamily protein (.1) AT2G34990 146 / 2e-40 RING/U-box superfamily protein (.1) AT4G40070 142 / 2e-38 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041134 [exp] 298 / 2e-97 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 295 / 2e-96 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10004460 [exp] 189 / 2e-55 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 187 / 1e-54 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 169 / 2e-48 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 163 / 2e-46 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029949 [exp] 115 / 2e-29 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10004572 [exp] 105 / 3e-25 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1) Lus10035368 [exp] 104 / 9e-25 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160900 [exp] 205 / 3e-61 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 174 / 4e-50 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 165 / 1e-46 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 120 / 6e-31 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 107 / 2e-26 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 103 / 6e-24 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 101 / 2e-23 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 101 / 4e-23 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 95 / 2e-21 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 96 / 4e-21 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029794 pacid=23159814 polypeptide=Lus10029794 locus=Lus10029794.g ID=Lus10029794.BGIv1.0 annot-version=v1.0 ATGAACCGTCTAAGTGGAGTTGCTACTTCTGCAGCTGGTTTCGTGTTTTGGTACGCAATCCAGCTTGCGGAAGGGCAGGCCGGGGACATGTTCTCATCGC CGCCCTCAGAGGGTGCGTTCAAGCTGAGTTCCCAGTTCAATCCGACAATGGCGATCTTGATGGTCGTTCTGGTGGCGGCTTTCTTCTTTGTGGGGTTCTT CTCAATCTACCTCCGTCGATCCTACATGGGACGGAGGTTGTTCGGCGAGGACTTCCATTTGGACCACTTCACAGCGGGGCGGTGGTCCGTAAGCGAGCCG CAGGGGTTGGACTCGGAGGTCATCAGCACGTTCCCGACTTTTGTGTACTCGTCGGTCAAGGACTTGAAGATTGGGAAAGGCGGGATGGAATGTGCGGTGT GTTTGTGCGAGTTCGAGGACCATGAAACGCTGCGTTTGATTCCTAAATGCAGCCATGTTTTCCACTCTGATTGCATCGATGCTTGGCTTGTGTCTCACGT TACCTGCCCTGTCTGTCGGGCCAATTTGTCCCCGGCCTTGCCCGAGTTGTCGTTCTTTTCGTTCCGAGGTTTGGACCGGGAATCACACCCGACCGAACCG AGTTATAATTGGAGTGGTACGGTTGATGACAGTGTGGATACCGACCCGAGTGATCAATTGCCTCAGATTTTGGCTCAGATTAGTAGCCAGGAAGAGAGCA AGGTAGACGTCGTTGCAACACAGGTACACGGGTCGATTGGTTCACACTCCCGCACCCGTTCGAATGGGTGGAGTTTTAGGCAATTATTTCCAAGGTCACA CTCAACGGGTCACTCATTGATTCAATTGGAAGAAGATCCTGAGCGGTTCACTTTAAGACTGTCAGAAGATGTAAGAAACCAATTGATGAGCACCCAATTG ACTCGAGCAAAGAGTTGCGGCATTGTGTTCACTAGAGCGAGGAGTGGGCGGAGAGGGTTCAGGAGTGAAGGTGGTGGTGGCGACGGAGGAGGAAATTGGC GTAAGGGCAAAACTTCGAACAGCTATGAACGGTTGGACCTTGATTCAGAAGATCGGTTCGGTAAGAAGGGTTCAACGGTTGGACTTCCACCTCTTCCTCC AAAAAATTGTTTGGGTTCCGATTCCAGTTCGAGCCGTGCAGTTGGGAAGAGGGGTTTAACCGGCCTCGGTACAAACGAGGACTCTAGTGGGAGTTTACCA AGAAGGTCCTCGAGGTCGGTAAGATCGTCATTTGACCGATTCTTGCTCGGATTGGATACGAGTTACGGTAGTAGTAGCAGTAACAACCAAAAACCGGTTG GTGAACGGTCATTCGATCGACTAACAGACAATAACCATGTTTAG
AA sequence Show only first row Show all	>Lus10029794 pacid=23159814 polypeptide=Lus10029794 locus=Lus10029794.g ID=Lus10029794.BGIv1.0 annot-version=v1.0 MNRLSGVATSAAGFVFWYAIQLAEGQAGDMFSSPPSEGAFKLSSQFNPTMAILMVVLVAAFFFVGFFSIYLRRSYMGRRLFGEDFHLDHFTAGRWSVSEP QGLDSEVISTFPTFVYSSVKDLKIGKGGMECAVCLCEFEDHETLRLIPKCSHVFHSDCIDAWLVSHVTCPVCRANLSPALPELSFFSFRGLDRESHPTEP SYNWSGTVDDSVDTDPSDQLPQILAQISSQEESKVDVVATQVHGSIGSHSRTRSNGWSFRQLFPRSHSTGHSLIQLEEDPERFTLRLSEDVRNQLMSTQL TRAKSCGIVFTRARSGRRGFRSEGGGGDGGGNWRKGKTSNSYERLDLDSEDRFGKKGSTVGLPPLPPKNCLGSDSSSSRAVGKRGLTGLGTNEDSSGSLP RRSSRSVRSSFDRFLLGLDTSYGSSSSNNQKPVGERSFDRLTDNNHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72200			RING/U-box superfamily protein...		Lus10029794 [exp]	0	1
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	2.0	0.8169
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	6.8	0.7635
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	11.1	0.7564
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039858 [exp]	12.4	0.7283
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	13.9	0.7359
AT5G59120		ATSBT4.13	subtilase 4.13 (.1)		Lus10000434 [exp]	16.2	0.6773
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10038246 [exp]	17.1	0.6738
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	17.5	0.7285
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10036473 [exp]	20.6	0.7342
					Lus10027332 [exp]	21.3	0.6381

Compare expression of checked genes

Lus10029794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.