Plant FIBer expression Database

Lus10029795 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G06010 217 / 1e-72 ORG4 OBP3-responsive gene 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020742
[exp]
274 / 2e-95 AT2G06010 233 / 7e-79 OBP3-responsive gene 4 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G065800
[exp]
227 / 1e-76 AT2G06010 299 / 4e-105 OBP3-responsive gene 4 (.1)
Potri.006G142000
[exp]
218 / 8e-73 AT2G06010 288 / 4e-100 OBP3-responsive gene 4 (.1)
PFAM info
Representative CDS sequence
>Lus10029795 pacid=23159767 polypeptide=Lus10029795 locus=Lus10029795.g ID=Lus10029795.BGIv1.0 annot-version=v1.0
ATGGAGCCGCCGCATCAGCACAACCCAGAAGAACCGGCCTCTTGGGATGATCTTTGCAGTATCAATTTGGTACCTTCAGAGTTGGTTTTCAAGTTCAGAA
AGGAAATTGAAGGGATTCGAATTGGTGTCAATCTCGAGTTCTACAACGCTCCGGTCAATGATGTTCAGACGAAGCTCGTTCTGAAGCCATTGTCATCAGA
ACGGAACTGGAAGTTCATATGCGAGCCTATACGCCAGGAAGTGCGTGTTCAGTCCAAAAAGCTTCCGTTGAACAGATTCCTAAACGTACAGGTAGGCATA
GGGCATAGTTTCAAGCTGAATGCACTTTCTTGGCAGTGGAAACTTAACACTTGCATGGGCGGTGACGATATATCTCGAATACGGAACAAGACAACCCTCT
GTTGTTGCCCCGGTCTAGATTTTCGGTTTGGGTGGCGAGCAGACTTTGTACTCCCTGAATTTAACGGGCAAGGCTTTGGCGAAAGACGAGCCATTGTTCA
ACATGAAGACTGGACGACTGGATGCTTCGTTGGACAGGATTGA
AA sequence
>Lus10029795 pacid=23159767 polypeptide=Lus10029795 locus=Lus10029795.g ID=Lus10029795.BGIv1.0 annot-version=v1.0
MEPPHQHNPEEPASWDDLCSINLVPSELVFKFRKEIEGIRIGVNLEFYNAPVNDVQTKLVLKPLSSERNWKFICEPIRQEVRVQSKKLPLNRFLNVQVGI
GHSFKLNALSWQWKLNTCMGGDDISRIRNKTTLCCCPGLDFRFGWRADFVLPEFNGQGFGERRAIVQHEDWTTGCFVGQD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G06010 ORG4 OBP3-responsive gene 4 (.1) Lus10029795
[exp]
0 1
AT1G12650 unknown protein Lus10017837
[exp]
3.5 0.8425
AT3G10530 Transducin/WD40 repeat-like su... Lus10037324
[exp]
9.4 0.7934
AT4G27090 Ribosomal protein L14 (.1) Lus10003627
[exp]
12.2 0.7461
AT5G16880 Target of Myb protein 1 (.1.2.... Lus10039144
[exp]
16.2 0.7889
AT1G12650 unknown protein Lus10024493
[exp]
25.5 0.7532
AT5G59240 Ribosomal protein S8e family p... Lus10016587
[exp]
26.1 0.7546
AT3G24550 ATPERK1 proline-rich extensin-like rec... Lus10011678
[exp]
29.9 0.7247
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Lus10039931
[exp]
30.2 0.7868
AT3G19630 Radical SAM superfamily protei... Lus10005409
[exp]
36.8 0.7159
AT5G45920 SGNH hydrolase-type esterase s... Lus10000525
[exp]
40.3 0.7680

Lus10029795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.