Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 77 / 2e-16 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 69 / 2e-13 HXXXD-type acyl-transferase family protein (.1) AT3G29590 67 / 5e-13 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29670 67 / 9e-13 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 65 / 4e-12 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 65 / 4e-12 HXXXD-type acyl-transferase family protein (.1) AT1G03495 62 / 3e-11 HXXXD-type acyl-transferase family protein (.1) AT1G03940 57 / 1e-09 HXXXD-type acyl-transferase family protein (.1) AT5G39080 57 / 2e-09 HXXXD-type acyl-transferase family protein (.1) AT5G39090 56 / 4e-09 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020721 [exp] 350 / 5e-120 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10036582 [exp] 276 / 5e-88 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035802 [exp] 264 / 4e-86 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 218 / 8e-69 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 111 / 2e-28 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 108 / 2e-27 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 100 / 3e-24 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 96 / 8e-23 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 89 / 1e-20 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 114 / 1e-29 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 113 / 4e-29 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 112 / 9e-29 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G455150 [exp] 108 / 9e-29 AT5G39050 191 / 7e-58 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 110 / 6e-28 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 103 / 1e-25 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 103 / 2e-25 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 103 / 2e-25 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 102 / 3e-25 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096132 [exp] 102 / 4e-25 AT3G29670 308 / 2e-100 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10029797 pacid=23159687 polypeptide=Lus10029797 locus=Lus10029797.g ID=Lus10029797.BGIv1.0 annot-version=v1.0 ATGAATTCAGATGACATTGCGTTGGAGTACTGGAACAATTGGTTCCAACTCCGGCAGCAGCTTCCAGGTATGGATCCGAATCCAAATCCTAGAAGCTTGG AGCTTCTATGGAGTTTGGTAGACAGCGAATCGAAACGATTGCGATCGGCATTCCACTTCTCCAGAGAGAGAATCGACAAATTGAAGGAAGCATTGATCCC CAAAATAGAAAATCCTAATTACTTATCCAGCTTCGTAATCACTCTGGCTTACACGGCAGCTTGCATCGTGAAAACGGAACTGAGAGGCGAGTCGGCTACG ATCCAGCTAGCGTTCACTGCAGGTTTCAGATCCCGATTGGATCCTCCGGTTCCGGATAATTTCTTCGGCAACTGCGTGTCCCCGTTCGAAGTGGTCCTGC GTGCGGCGGAGGCGGTGGACGAAGACGGCGGCATGGCATACGCGGCGGGGAAGATCATAGAGACGATCAAGGTGTTGGAGCGAGGAGTTATGGTGGGACC GAAGGAGAGGCTTGCCAATTTTCTGTTTACGGGAAAACCGGAATTTGCGGTCGGAGTGTCAGGGTGGCCAGGCTGGGGATGTATGGAGTGGATTTCGGGT ACGGAAGGAAATGGATGTATTCTCTGCTGCATTCAGCGGAGAAAGTGA
AA sequence Show only first row Show all	>Lus10029797 pacid=23159687 polypeptide=Lus10029797 locus=Lus10029797.g ID=Lus10029797.BGIv1.0 annot-version=v1.0 MNSDDIALEYWNNWFQLRQQLPGMDPNPNPRSLELLWSLVDSESKRLRSAFHFSRERIDKLKEALIPKIENPNYLSSFVITLAYTAACIVKTELRGESAT IQLAFTAGFRSRLDPPVPDNFFGNCVSPFEVVLRAAEAVDEDGGMAYAAGKIIETIKVLERGVMVGPKERLANFLFTGKPEFAVGVSGWPGWGCMEWISG TEGNGCILCCIQRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10029797 [exp]	0	1
AT4G14090			UDP-Glycosyltransferase superf...		Lus10040591 [exp]	15.3	0.8729
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	24.5	0.8607
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10006451 [exp]	25.3	0.8551
AT3G29680			HXXXD-type acyl-transferase fa...		Lus10029798 [exp]	28.6	0.8084
AT2G42390			protein kinase C substrate, he...		Lus10002183 [exp]	28.8	0.8162
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	33.2	0.8524
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	36.8	0.8462
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	38.2	0.7960
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	50.2	0.7916
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	55.2	0.8001

Compare expression of checked genes

Lus10029797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.