Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 394 / 2e-137 SAG12 senescence-associated gene 12 (.1) AT3G48340 367 / 1e-126 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G50260 365 / 5e-126 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 362 / 2e-123 Granulin repeat cysteine protease family protein (.1) AT4G35350 348 / 2e-119 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G49340 345 / 4e-118 Cysteine proteinases superfamily protein (.1) AT2G27420 345 / 5e-118 Cysteine proteinases superfamily protein (.1) AT5G43060 347 / 2e-117 Granulin repeat cysteine protease family protein (.1) AT1G29090 342 / 7e-117 Cysteine proteinases superfamily protein (.1) AT3G48350 340 / 7e-116 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020722 [exp] 694 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 684 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10028502 [exp] 678 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 669 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 664 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 663 / 0 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10006542 [exp] 663 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 662 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10003275 [exp] 658 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 551 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 549 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 546 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 546 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 545 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 542 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 492 / 4e-176 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 485 / 4e-174 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 475 / 6e-170 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 471 / 3e-168 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10029799 pacid=23159813 polypeptide=Lus10029799 locus=Lus10029799.g ID=Lus10029799.BGIv1.0 annot-version=v1.0 ATGGCTTTGAACAACAAGTTCATTCTCCTGGCTTCCATCTTTATATTGGGAGGAGCTCTAGTTTCTGAGGCCACGGCACGATATACCCTTCCTGAAGCTT CCATACGCCTAAGGCATGAGCAGTGGATGACTCGTTATGGCCGAGTCTACAATAGTCCTAGCGAAAAGGAGACTCGCTACCAGATCTTCAAACGCAACGT AGCCTTCATCGACTCTTCCAATGCTGATGGAAACAAGTCTTACAAGCTTGGAGTCAATCAGTTCGCTGATTTGACTAACGAGGAGTTCAAAGGCTCTAGG AACGGGTTCAAGGGACACATGTGCTCTCCGCAACATGGACCTTTCAGGTACGAAAATGTGAGTGCGGTCCCAACGACCATGGACTGGAGGAAGAAGGGAG CAGTCACTCCTATCAAAGACCAGGGTCAATGCGGAAGCTGCTGGGCATTTTCGGCCGTGGGAGCCATGGAAGGAATCCACCAGCTCAGTACTGGTAAATT GGTGTCCCTTTCGGAGCAGGAATTGGTCGACTGCGACACCAAGGGAGAGGACCAAGGATGCAGCGGTGGCTTGATGGATGATGCGTTCAAGTTCATCATT CAAAACAAGGGATTGACTAGCGAGACCAACTACCCTTATGACGCTGCTGATGGAACCTGTAATGCCAACAAAGAAGGCAGCAGTGCAGCCAAGATTACGG GGTACGAAGATGTGCCAGCCAACAACGAGGCCGCATTGATGAAAGCTGTAGCAAGCCAACCAATTTCAGTCGCCATTGATGCAGGGGATTCCTCGTTCCA ATTCTACTCGAGCGGGATTTTCACCGGAGAATGTGGGACCGAACTAGACCATGGAGTGACGGCAGTTGGGTACGGAGAGAGCGGTGGGAAGAAGTACTGG TTGGTGAAAAACTCGTGGGGAGCACAGTGGGGAGAAGCTGGATACATTAGGATGCAGAAAGATGTTACCGCTAAAGAAGGTCTCTGCGGAATTGCCATGC AAGCTTCCTATCCCACTGCCTAA
AA sequence Show only first row Show all	>Lus10029799 pacid=23159813 polypeptide=Lus10029799 locus=Lus10029799.g ID=Lus10029799.BGIv1.0 annot-version=v1.0 MALNNKFILLASIFILGGALVSEATARYTLPEASIRLRHEQWMTRYGRVYNSPSEKETRYQIFKRNVAFIDSSNADGNKSYKLGVNQFADLTNEEFKGSR NGFKGHMCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCSGGLMDDAFKFII QNKGLTSETNYPYDAADGTCNANKEGSSAAKITGYEDVPANNEAALMKAVASQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGESGGKKYW LVKNSWGAQWGEAGYIRMQKDVTAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029799 [exp]	0	1
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	24.2	0.4864
AT3G18150			RNI-like superfamily protein (...		Lus10014141 [exp]	25.3	0.5125
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	35.2	0.4838
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	55.6	0.4564
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	56.1	0.4695
AT3G24620		ATROPGEF8, ROPG...	RHO guanyl-nucleotide exchange...		Lus10034927 [exp]	58.9	0.4344
					Lus10031119 [exp]	61.5	0.4378
					Lus10000400 [exp]	68.7	0.4563
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	70.8	0.4563
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	72.9	0.4563

Compare expression of checked genes

Lus10029799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.