Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23630 1918 / 0 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) AT4G37640 100 / 7e-21 ACA2 calcium ATPase 2 (.1) AT1G27770 98 / 3e-20 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT1G10130 97 / 4e-20 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT2G22950 94 / 5e-19 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT1G17260 92 / 1e-18 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT4G00900 91 / 2e-18 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G07810 86 / 1e-16 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT1G07670 84 / 4e-16 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT4G29900 82 / 3e-15 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020724 [exp] 2360 / 0 AT5G23630 1928 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Lus10018668 [exp] 105 / 2e-22 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10007734 [exp] 104 / 4e-22 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018687 [exp] 96 / 2e-19 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10019300 [exp] 87 / 5e-17 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10042040 [exp] 85 / 4e-16 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10011522 [exp] 84 / 4e-16 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10016366 [exp] 83 / 1e-15 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10028203 [exp] 78 / 3e-14 AT5G62670 1226 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137100 [exp] 2055 / 0 AT5G23630 1917 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Potri.T012200 [exp] 2026 / 0 AT5G23630 1883 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Potri.002G117400 [exp] 101 / 2e-21 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.013G040201 [exp] 101 / 2e-21 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.007G055500 [exp] 99 / 9e-21 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.005G052700 [exp] 98 / 3e-20 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.014G014700 [exp] 92 / 1e-18 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.014G101900 [exp] 92 / 2e-18 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.014G016600 [exp] 92 / 2e-18 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.001G161400 [exp] 92 / 2e-18 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10029800 pacid=23159770 polypeptide=Lus10029800 locus=Lus10029800.g ID=Lus10029800.BGIv1.0 annot-version=v1.0 ATGTTGAGCTTCCATGTTGGTGGGAAAGTGGTGGATAAAGTTGATTTATTGAGGAAGAAGCATTGGACATGGCGACTGGATGTGTGGCCGTTTGCTATTA TCTATGCTCTGTGGCTCACTACTGTCATCCCGAGCCTCGACATTGGTGATGCCTTCATTGTTTTCGGCGGCCTTGTTGCATTCCACATTCTGGTCTTGCT CTTCACAGCTTGGTCTGTTGATTTCAGGTGCTTCGTTCAGTTCAGTAAGGCTAATGATATTCATCAAGCAGATGCATGTAAGATAACTCCAGCAAAGTTT TCAGGATCCAAAGAAGTTGTGCCCCTTTATATTAGAAAACAAGCAGGAGGGTCTTCATCTGCAGAGGATCAGGATGAGATTTTCTTTGATTTCCGAAAGC AGTGCTTTATATATTCAGATGAGAAGAAGACATTTTGCAAGCTTCCGTATCCAACGAAAGAAAAATTTGGTTACTATCTTAAATGCACCGGCCATGGCTC TGAAGCCAAAGTACTCACTGCTAGTGAAAAATGGGGGCGAAATGTATTCGAATATCCGCAGCCAACATTCCAAAAGCTGATGAAAGAGCACTGCATGGAA CCCTTTTTCGTGTTTCAGGTGTTCTGCGTGGGACTTTGGTGCTTGGATGAATATTGGTACTACAGCATATTCACCCTGTTTATGCTGTTTATGTTTGAAT CAACAATGGCCAAAAGCAGGCTCAAGACTCTAAGTGAGCTTAGGCGTGTGAGAGTGGACAATCAAACACTTATGGTACACCGGTGTGGAAAGTGGGTGAA GCTTTCTGGAACTGAACTACTTCCTGGGGATATTGTATCCATTGGTCGATCTGTTGGACAGAATGGAGAAGACAAGACAGTGCCTGCAGACATGCTTCTC TTAGCAGGGAGCGCCATTGTGAATGAAGCCATTCTCACAGGCGAGTCAACTCCCCAGTGGAAGGTTTCAATTGCTGCTAGGGGAAAAGATGAGAATCTAT CAGCTAGAAGGGATAAAACCCATGTCTTATTTGGTGGAACTAAGATATTGCAGCACACTCCAGATAAGACTTTCACCCTGCGTACCCCTGATGGTGGTTG CCTGGCTGTTGTTCTAAGAACTGGGTTCGAAACAAGTCAAGGAAAGTTGATGAGGACTATTTTGTTCTCTACAGAAAGGGTAACTGCTAACAGCTGGGAA AGTGGTCTTTTCATTCTGTTCTTGGTAGTGTTTGCTGTCATCGCAGCAGGTTATGTGCTGAAGAAGGGACTGGAGGACCCCACAAGGAGCAAGTACAAGC TTTTCCTCAGTTGTTCATTCATCATAACATCCGTGATCCCACCTGAGTTGCCAATGGAACTATCAATAGCAGTTAATACATCTCTAATTGCCTTGGCACG TCGTGGAATATTTTGCACGGAGCCTTTCCGTATTCCATTTGCCGGGAAGGTTGATATTTGTTGTTTTGACAAGACTGGAACACTCACTTCAGATGATATG GAGTTCCGTGGGGTTGTTGGATTGGATGATACTACTGATTTAGAAAATGACATGACTAAAGTGCCTTCCCGTACAGTGGAAATTTTGGCAGCTTGTCATG CATTGGTTTTTGTGGACAATAAGCTGGTTGGCGATCCTCTTGAGAAGGCTGCACTTAAAGGAATAGACTGGAGCTATAAATCTGACGAGAAGGCTATGCC CAAGAGGGGAAGCGGGAATGCTGTTCAGATTGTTCAACGACACCATTTTGCATCTTATTTAAAGAGAATGTCAGTTGTCGTTCGTGTAGAGGAGACATTT TTGGCTTTTGTAAAGGGTGCACCCGAGACTATTCAAGATAGGCTTACTAACTTGCCACCATCCTATGTCGATACATACAAGAAATACACACGTCAAGGCT CCCGCGTTTTGGCCCTCGCTTTCAAGTCCCTTCCAGACATGACAGTCAGTGAAGCACGAAATATGGATAGGGATGAAGTGGAGAACGGTCTTACTTTTGC TGGTTTTGCTGTGTTTAACTGCCCAATCAGAGCAGATTCAGCTACTATATTGTTAGAGTTGAAGAACTCATCGCATGACTTGGCAATGATTACTGGCGAC CAAGCCTTGACAGCTTGCCATGTTGCTAACCAAGTGCACATAATCTCGAGACCAACATTGATACTTGTCAAATCGAGAAATGAAAGATACGAGTGGATTT CACCAGATGAAACAGAAACCGTTCCGTACAGTGACAAAGAGGTTGAGGCTTTATCAGAAAGTCATGACCTGTGCATTGGAGGTGACTGTATGGAAATGCT GCAACAGAGTTCAGCTGTTCTTCGAGTCATTCCTTTTGTCAAGGTCTTTGCAAGGGTCGCCCCTGAACAAAAAGAATTGATCATGACTACATTCAAGACA GTGGGGAGAGTTACATTGATGTGCGGTGATGGCACAAATGATGTTGGAGCTCTGAAGCAGGCCCATGTCGGTGTTGCACTGTTGAATGCAGTACCTCCAT CTTCAGAAACAGCTAAAGATAAAGATGGGAAAGAGGGGAAAGAGGGAAATCAAAAGGCTGTCAAACCCAAGAAAACAAATGCTACTGAGACAGGATCTTC AAAGAGCAAAGCTCTGACTAAGGCAGAGTCAAGCGGTAGGTCTTCAGCTGGTAACCGTCATCTAACAGCTGTAGAAATGCAGCAACAGAAACTGAAGAAA CTGATGGACGAGATGAACGAAGAGGGCGATGGTCGCTCTGCTCCCGTAGTCAAACTCGGTGATGCCTCAATGGCGTCACCTTTCACGGCTAAGCATGCGT CAGTTGCCCCAACTACAGACATTATTCGTCAAGGTCGCAGCACTCTGGTGACTACCCTTCAGATGTTTAAAATCCTTGGTCTGAATTGCCTTGCCACTGC CTATGTACTTAGTGTCATGTACTTGGATGGAGTAAAGCTCGGCGACGTACAGGCAACAATCAGCGGCATATTTACGGCCGCATTTTTCCTCTTCATCTCT CACGCAAGGCCTCTCCCGACTTTATCCTCTGAGCGGCCGCACCCTAACATCTTCTGCTTCTACGTCTTCCTTTCTCTGATGGGACAGTTTGCAATGCACT TGGTCTTCCTCATTTCTTCGGTGAAAGAAGCGGAAAAGCACATGCCGGAGGAGTGCATCGAGCCGGACTCTGATTTCCACCCGAATCTGGTGAACACGGT TTCGTACATGGTGAGCATGATGCTTCAGGTGGCCACTTTTGCTGTGAACTACATGGGACACCCTTTCAACCAGAGTATCTCGGAGAACAAACCCTTCTTG TATGCAATTCTTGGTGCTGGTGGTTTTTTTACCATCATAACCTCGGATCTGTTCAGGGATCTGAACGACTGGTTAAAGTTGGTGCCTTTGCCGCTGGGTT TGAGGAACAAGCTTCTGATCTGGGCTCTGCTTACCTACTTCGCCTGCTATTCGTGGGATAGATTGTTGAGGTGGGCATTCCCTGGCAAGGTTCCAGCCTG GCAGAAAAAGCAACGTGCTGCTGCTGCGAATTTGGAGAAGAAAAAACGGGTATGA
AA sequence Show only first row Show all	>Lus10029800 pacid=23159770 polypeptide=Lus10029800 locus=Lus10029800.g ID=Lus10029800.BGIv1.0 annot-version=v1.0 MLSFHVGGKVVDKVDLLRKKHWTWRLDVWPFAIIYALWLTTVIPSLDIGDAFIVFGGLVAFHILVLLFTAWSVDFRCFVQFSKANDIHQADACKITPAKF SGSKEVVPLYIRKQAGGSSSAEDQDEIFFDFRKQCFIYSDEKKTFCKLPYPTKEKFGYYLKCTGHGSEAKVLTASEKWGRNVFEYPQPTFQKLMKEHCME PFFVFQVFCVGLWCLDEYWYYSIFTLFMLFMFESTMAKSRLKTLSELRRVRVDNQTLMVHRCGKWVKLSGTELLPGDIVSIGRSVGQNGEDKTVPADMLL LAGSAIVNEAILTGESTPQWKVSIAARGKDENLSARRDKTHVLFGGTKILQHTPDKTFTLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWE SGLFILFLVVFAVIAAGYVLKKGLEDPTRSKYKLFLSCSFIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDM EFRGVVGLDDTTDLENDMTKVPSRTVEILAACHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKAMPKRGSGNAVQIVQRHHFASYLKRMSVVVRVEETF LAFVKGAPETIQDRLTNLPPSYVDTYKKYTRQGSRVLALAFKSLPDMTVSEARNMDRDEVENGLTFAGFAVFNCPIRADSATILLELKNSSHDLAMITGD QALTACHVANQVHIISRPTLILVKSRNERYEWISPDETETVPYSDKEVEALSESHDLCIGGDCMEMLQQSSAVLRVIPFVKVFARVAPEQKELIMTTFKT VGRVTLMCGDGTNDVGALKQAHVGVALLNAVPPSSETAKDKDGKEGKEGNQKAVKPKKTNATETGSSKSKALTKAESSGRSSAGNRHLTAVEMQQQKLKK LMDEMNEEGDGRSAPVVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGIFTAAFFLFIS HARPLPTLSSERPHPNIFCFYVFLSLMGQFAMHLVFLISSVKEAEKHMPEECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFL YAILGAGGFFTIITSDLFRDLNDWLKLVPLPLGLRNKLLIWALLTYFACYSWDRLLRWAFPGKVPAWQKKQRAAAANLEKKKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10029800 [exp]	0	1
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10020724 [exp]	1.0	0.9762
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	4.7	0.9614
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	6.6	0.9448
AT1G11160			Transducin/WD40 repeat-like su...		Lus10018458 [exp]	7.2	0.9362
					Lus10021651 [exp]	8.5	0.9458
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	9.2	0.9542
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	9.2	0.9546
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	9.8	0.9555
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	11.2	0.9501
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	13.1	0.9397

Compare expression of checked genes

Lus10029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.