Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024216 [exp] 112 / 4e-31 AT1G74670 106 / 1e-30 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10001304 [exp] 97 / 7e-23 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10009207 [exp] 78 / 3e-17 ND / Lus10037707 [exp] 77 / 3e-16 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10030065 [exp] 76 / 4e-16 ND / Lus10035493 [exp] 72 / 4e-14 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10005217 [exp] 69 / 2e-13 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10004792 [exp] 68 / 3e-13 ND / Lus10010518 [exp] 64 / 2e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029801 pacid=23159746 polypeptide=Lus10029801 locus=Lus10029801.g ID=Lus10029801.BGIv1.0 annot-version=v1.0 ATGAACCGTGGTGGTTCTGGAATTCCGATCTATTCGGGAATGCTACTATATACAATTGGACTTTCGTTGTTTTTGCAGTCTGAGGATGTGGGATACCGTA TGGGAGACATACCTGCTGTTGATGGTACAGGATGGGACAATGGCACCAAGAGAGCGGTGTTGGGGGTGAAATCCCTGGCCTCGATCGTTGGTACTAGTGG GAACGATTTGAAATTTGTTGAAGTCCTAGATTCAGCTTATGTGGACGATGCTTTGATGATCCCTAAGGAAATCATTGATAAGGGGGTAAAAAGATTGCGA TCAACTATTGTAGCGCTGTTTATGGGATCGCCTCTATCGGTGAGAGTCGTCTCGGCTATGATCAATAGGCTCTGGGGTTTTGAAGGGGAGGTTGTGCTTT CTGTACTCTCTGGGTTACATACGAATGATGCTATTGAGTGGATGGTGAGTAGAATTGGTATGGCAATCAACAAGTTTGTTATCACGGGGCTTACAATTAA GCAAAGTCATTCTTATGAGAGAAAAGTTGAGCCTGTAAAGGTCTGGAAACCCATCTTCCAGCCATCAACCTTAGTGGAAGCTATTACTGTAGTGGGCAAT GAACTTAAGCCTTTGCTTAAAGGGGAGAATTCACCTACGAGTAATACCTTACCACATGCTAAAGGGGGATCTGATTTTTCCATCGACACTTTTGTGGAAG TGGAGGTGGATCTTTTAGCTCAGTAG
AA sequence Show only first row Show all	>Lus10029801 pacid=23159746 polypeptide=Lus10029801 locus=Lus10029801.g ID=Lus10029801.BGIv1.0 annot-version=v1.0 MNRGGSGIPIYSGMLLYTIGLSLFLQSEDVGYRMGDIPAVDGTGWDNGTKRAVLGVKSLASIVGTSGNDLKFVEVLDSAYVDDALMIPKEIIDKGVKRLR STIVALFMGSPLSVRVVSAMINRLWGFEGEVVLSVLSGLHTNDAIEWMVSRIGMAINKFVITGLTIKQSHSYERKVEPVKVWKPIFQPSTLVEAITVVGN ELKPLLKGENSPTSNTLPHAKGGSDFSIDTFVEVEVDLLAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029801 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	5.9	0.8682
AT3G20720			unknown protein		Lus10011166 [exp]	6.0	0.8537
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	6.9	0.8455
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	7.3	0.8575
AT5G23490			unknown protein		Lus10019229 [exp]	9.2	0.8441
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	9.9	0.8406
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	12.6	0.8408
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	12.6	0.8552
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	16.2	0.8148
AT1G58230			binding (.1)		Lus10042866 [exp]	17.6	0.8500

Compare expression of checked genes

Lus10029801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.