Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 702 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 501 / 5e-166 RLK4 receptor-like protein kinase 4 (.1) AT4G27290 447 / 1e-145 S-locus lectin protein kinase family protein (.1) AT4G11900 435 / 3e-140 S-locus lectin protein kinase family protein (.1) AT4G21380 432 / 6e-139 ARK3 receptor kinase 3 (.1) AT1G11340 414 / 1e-131 S-locus lectin protein kinase family protein (.1) AT1G65800 412 / 2e-131 ARK2 receptor kinase 2 (.1) AT1G65790 409 / 3e-130 ARK1 receptor kinase 1 (.1) AT1G11410 400 / 4e-127 S-locus lectin protein kinase family protein (.1) AT1G11280 399 / 5e-127 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042266 [exp] 650 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 582 / 0 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 579 / 0 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 576 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 479 / 1e-157 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10033748 [exp] 468 / 6e-154 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 463 / 3e-151 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 469 / 4e-146 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 444 / 7e-144 AT4G21380 608 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 745 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 723 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 705 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 541 / 0 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.001G411000 [exp] 485 / 7e-160 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 477 / 1e-156 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 470 / 4e-154 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 463 / 2e-151 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 463 / 4e-151 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.001G412300 [exp] 461 / 3e-150 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10029802 pacid=23159677 polypeptide=Lus10029802 locus=Lus10029802.g ID=Lus10029802.BGIv1.0 annot-version=v1.0 ATGGGTATCAGAATCTTGAGCTGCCTGATCCTCTTGTGTTTCTCTCTCAATGTTCATTGTTCCACAGGATCTCTAACCACCATCGTCCCGGGCCAATCCC TTTCCGGGAACCAAACTCTGACGTCTGCAGAAGGAAACTTCGCCCTGGGTTTCTTCCAACCCGGGGGTAGTAAATCTGGGCGACATTACATCGGTATTTG GTACAACAAGCTGCCAAATCAGACCGTGGTTTGGGTTGCAAACCGAGGTCAGCCTGTTTATGATCCGTCTCGGTCAGAGCTGAGACTCGACCGTAACGGA AACTTGGCTCTTCGCAACGAGTCGGGAAATGTGGTATGGTCTACGAACTCAATTTCGAAATCTAGCGTGGCGTTGCTTCTCGACACTGGAAACTTTGTCA TAAGGGATGCTGAGAATTCGAGCGTGACGTTCTGGCAGAGTTTCGACCATCCAACCGACCACTGGCTTCCAGGTTCGAAGATCGGCTACAGCAAGGTTAG TAGTGCGAGACAAATCCTTACTACGTGGCGGAGCCCGATTAATCCTGCACCTTCTGACTTCACCTTGGAGCCGAACCAGAACGGATCGGGCCATGTTCTG CTTTGGAATGGCTCCGAAATGTACTGGACAAGCGGGGTGTGGAATGGTAGGATTTTCAGCCTTGTTCCTGAGTTACAGCTGAATTACTATGTCACGAATA TGAGCCGCATTACGAACGACAAGGAAGATTACTTCACCTATGATTCTGCAGTCCCTTCCGCTTTCACCAGGTTCGTGGTCGAGTCCAGCGGCCAGCTGAA GCAATACGTCTGGGGCAGGAACTTCACGAGTTGGACGCTCTTCTGGACACGCCCGACTCAACTGTGTCAGGTTTATGCATTCTGTGGGGCTGCCAGCATC TGCAACCTTCAGGATGAGCCTCTTTGCATTTGCATCGAGGGGTTTGAACCCGAATCGCAACGAGATTGGGATCTCGGGGATCATTCCGGCGGGTGTGTCA GGAAAGCTCCTCTCAACTGTACAGATAATGGTCCTGGGATGGATAAGTTTCTAACTCTTTCCAACATGCAGTTCCCTTCGAATCCAGAGTCCTTGCCAGC TGCTGCAAACATTAACGAATGCGAGTCTTCATGCTTGAGAAATTGTTCTTGCAATGCTTTCGCATATGATGATAATGGATGCCTCATCTGGAAAACAAGT CTGTTCAACCTCCAGCAACTCTTGGAATCTGAAAGGGTTGGGAAAGATATCCACGTCAGAGTTTCGTCGTCATTGATTACGTCACTACTTCCAAGTCAGC GTTCCAGAAAAGAACACACAACTGTAATAGTCGTTGCTGCAACGCTGGCAGGAGGAGCGTTAATACTTTGTATTATCCTCCTCGTCGTTCTATGGACGAG GAGGAGAAATCCATCGCCTGCTAAGTACAAGGCGAGGGATGATACGTTCTCCTTCTTTAGCTACAGAGAGCTGAAATCCGCTACGAGAAACTTCTCCGAG AAGCTTGGAGAAGGAGGGTTCGGGTCGGTATACAAAGGAACGTTACCGAACTCGACTCTCATTGCTGTGAAGCAGTTGAAGAGCCTTCAGCAAAGTGAGA AGCAGTTCATGGCAGAAGTGAAAACCATTGGAACAATCCAGCACATCAACCTCGTCCGGCTCAGAGGCTTCTCGGTTGAATCTTCGAAAAGGTTCTTGGT GTACGAGTACATGCCGAATGGCTCACTCGAATCGCTTCTGTTCCAACACACGGCATCAGCCACAACTCTAAGCTGGAAAAGCAGGTACCAGATTGCAGTT GGTACAGCAAGAGGGTTGTCCTACCTACACGAAGGCTGCAGAGACTGCATCATCCACTGCGACATCAAGCCTGACAACATCCTCCTGGACTCGGAGTACA CCCCAAAGGTTGCGGATTTAGGACTGGCAAAGATCTTCGGGCACGAAGTGAGCCGTGTGCTGACAACCATGAGAGGCACCAGAGGCTACTTGGCACCGGA ATGGATTTCGGGAGAGCCCATCACCTCGAAAGCTGACGTGTTTAGCTACGGGATGATGTTATTGGAGATCATATCGGGAAGCAGAAACCGAGACTACACA GAGGTAGAGAATTACTTCCCTTTCCAACTCGCCACCACCATAAGTCGACAGGATGATGTTCTGCCACTGCTGGACGAAAGATTGGAAGGAAATGCAGATT TGGAAGAGCTAAGAAGAGCCTGTAAAGTTGCCTGCTGGTGCATTCAGGATAATGAGAAGGATAGACCCACCATGAAGCAAGTGGTTCAAATCCTTGATGG AGTTTCTGATGTTAGCACCCCTCCGACTCCGCGGTTTCTCGAAGGATTTGCTGCAATCCCAGCAGGATCTATTGACTACCTTGGGACTTCTTCCAGTACA GAGTAA
AA sequence Show only first row Show all	>Lus10029802 pacid=23159677 polypeptide=Lus10029802 locus=Lus10029802.g ID=Lus10029802.BGIv1.0 annot-version=v1.0 MGIRILSCLILLCFSLNVHCSTGSLTTIVPGQSLSGNQTLTSAEGNFALGFFQPGGSKSGRHYIGIWYNKLPNQTVVWVANRGQPVYDPSRSELRLDRNG NLALRNESGNVVWSTNSISKSSVALLLDTGNFVIRDAENSSVTFWQSFDHPTDHWLPGSKIGYSKVSSARQILTTWRSPINPAPSDFTLEPNQNGSGHVL LWNGSEMYWTSGVWNGRIFSLVPELQLNYYVTNMSRITNDKEDYFTYDSAVPSAFTRFVVESSGQLKQYVWGRNFTSWTLFWTRPTQLCQVYAFCGAASI CNLQDEPLCICIEGFEPESQRDWDLGDHSGGCVRKAPLNCTDNGPGMDKFLTLSNMQFPSNPESLPAAANINECESSCLRNCSCNAFAYDDNGCLIWKTS LFNLQQLLESERVGKDIHVRVSSSLITSLLPSQRSRKEHTTVIVVAATLAGGALILCIILLVVLWTRRRNPSPAKYKARDDTFSFFSYRELKSATRNFSE KLGEGGFGSVYKGTLPNSTLIAVKQLKSLQQSEKQFMAEVKTIGTIQHINLVRLRGFSVESSKRFLVYEYMPNGSLESLLFQHTASATTLSWKSRYQIAV GTARGLSYLHEGCRDCIIHCDIKPDNILLDSEYTPKVADLGLAKIFGHEVSRVLTTMRGTRGYLAPEWISGEPITSKADVFSYGMMLLEIISGSRNRDYT EVENYFPFQLATTISRQDDVLPLLDERLEGNADLEELRRACKVACWCIQDNEKDRPTMKQVVQILDGVSDVSTPPTPRFLEGFAAIPAGSIDYLGTSSST E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	0	1
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	1.4	0.9735
					Lus10021406 [exp]	4.0	0.9631
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	4.6	0.9323
AT1G03055			unknown protein		Lus10024837 [exp]	4.8	0.8670
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	5.2	0.9559
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	5.7	0.9400
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10018949 [exp]	5.7	0.9009
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	5.9	0.9386
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	6.5	0.9035
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	6.7	0.9023

Compare expression of checked genes

Lus10029802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.