Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43040 922 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28600 495 / 5e-166 NPGR2 no pollen germination related 2 (.1) AT1G27460 435 / 2e-143 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020725 [exp] 1279 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 1056 / 0 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 1048 / 0 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10011793 [exp] 538 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 535 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 482 / 8e-161 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 474 / 6e-158 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 470 / 2e-156 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 464 / 8e-154 AT4G28600 728 / 0.0 no pollen germination related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055200 [exp] 950 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.008G169500 [exp] 525 / 2e-177 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 516 / 2e-174 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 512 / 6e-173 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.014G016000 [exp] 448 / 3e-148 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 446 / 2e-147 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029803 pacid=23159667 polypeptide=Lus10029803 locus=Lus10029803.g ID=Lus10029803.BGIv1.0 annot-version=v1.0 ATGATAGGGAGCAGCCAATCTGCAGAGTCCAGTGGGAGCAAGGACCAAATAAAGGTCCGCGAATTTTGCGCAAATGGAGGTTGCGTGAAAGCAGATGATA TTGAAGCAAAGCTCGATGAAGGAAACATACAAGCGGCCGAATCTTCCCTACGGGAGGGGTTATCTCTCAGTATCGAGGAAGCTAGATCACTCCTAGGGAG ATTGGAGTATCAGAGAGGGAATGTAGAAGGAGCCCTACGTGTTTTCGATGGCATCGATCTCCAAGCTGCATCGGAGAGATTGCAGTCGTCCTTAGCGGGC AAGAATGCTCACAAAAACCAATCCCCTGGGGGTGGCTCGCAGCATTCGGCCAGTTTGGTGCTCGAAGCAATATACTTGAAAGCCAAGTCTCTACAAAAGC TTGGGCGATCTTACGATGCTGCAAAAGAGTGTAAAAGTGTGCTTGATGCAGTGGAAAAGATATACCAGCAGGGAATATCTGACGTACAAGTAGACACTAG ATTACAAGAAACGGTTAGTCAAGCAGTAGAGCTACTTCCAGAGCTTTGGAAGCAGGCTGGTTATTACCCCGAAGCGATATCCGCTTACAGAAGAGCTCTC CTAAGTCAGTGGAGTCTCGAAAACGACTGCTGTGCGAGGATCCAGAAAGCATTTGCGGTGTTTTTGTTACACAGCGGAGTGGAGGCCACCCCTCCGAGCT TAGCATCTCAGGTCGAAGGTTCCTACGTACCAAAACATAATCTCGAAGAAGCTGTTTTGCTTTTGCTGATTCTTGTCAGGAGGTGTTGCCTCGGTAAGAC GAAATGGGACCCGTCGGTTATGGAGCATCTGTGCTTTGCATTATCCATGTGTAGCCAAACTGGCGTTCTCGGGAAGGAGCTCGAAGAGACAATGCCGGGT GTTCTCCACCGCACTGATCGTTGGAATACTTTAGCTTTTTGTTACAGTGGAGCAGGACAACAAAAAGCTGCTCTAAACTTGCTACGCAAGTCCCTCCATA GACACGAAAGACCGGATGATCTAAAGGCGCTCTTGCTGGCTGCGAAAATTTGCACCGAGGATTCGTATCTTGCTGCGGAGGGAGTTGAGTATGCAAAGAG AGCACTTACAAAAGCACAGGAAAGTGATGAGCATCTGAAAAGCGTGGCTGTCCACATGTTAGGTCTTTGTTTGGCGAAACAGGCGAATCTTTGTTCCTCC GATTTCGAAAGGACACGGTTGCAGTCCGAAGCGCTCAAATCTCTGGAAGCTGTGCTTGCTTTGGATCCAAGCAATCTAGATATAGTCTTTGACTTGAGTG TTCAATATGCCGAGCAACGGTATTTGAGCGTTGCTCTACGTTACGCCAAGCAATATATCGATGCAACTGGCGGCTCGATGTTGAAAGGTTGGAGGTTGCT TGTCCTGATCTTATCTGCTCAGCAGCGATTCTCGGAGGCTGCAGTGGTCACTGATGCTGCTTTGGACGAGACTGCGAAATGGGAACAAGGACCGTTGCTC AGATTGAAAGCAAAACTCAAGATCGCACAGTCCTTACCTGCGGAAGCTATTGAAACTTACCGGTATCTGCTTGCGTTGATCCAAGCTCAGAAGAAAGCTT TCGGCGCCATCATAAGTGTGTCGCAGTCTGAGGATGATAAGGTGAATGAATATGAAGTTTGGCATGGTCTAGCTGATTTGTATTCCAGTCTCTCTCAGTG GAAGGATGCAGAAGTTTGTCTAGACAAAGCAAGAGAACTGAAAAAGTACTCGCCGGAGTTACTTCACTCTCAAGGCAAGAACTCCAAATTGAGTGCGATG CACGCAGCCCGCGGAGAGTTCCAAGACGCTTTTTGTTCTTACATTTGTGGTCATATGATGGAGCCGAATCATGTCCCTGGCATCATACTGGTTGCCTCCT TAATATCCAAGAACAGGTCAGAGGCAGCATTACCTGTAGCAAGAAGCATACTCTCCGACGCGTTGAAGCTAGAACCGGCCAATCGTAAGGCTTGGTATCA TTTAGGGACTGTTCATAGGGACGATGGACGCACGGCTGATGCTGCAGACTGCTTCCAAGCTGCCTCCATGCTTGAGGAATCCGACCCGATTGAGAGTTTC AGTTCTGTCTACTGA
AA sequence Show only first row Show all	>Lus10029803 pacid=23159667 polypeptide=Lus10029803 locus=Lus10029803.g ID=Lus10029803.BGIv1.0 annot-version=v1.0 MIGSSQSAESSGSKDQIKVREFCANGGCVKADDIEAKLDEGNIQAAESSLREGLSLSIEEARSLLGRLEYQRGNVEGALRVFDGIDLQAASERLQSSLAG KNAHKNQSPGGGSQHSASLVLEAIYLKAKSLQKLGRSYDAAKECKSVLDAVEKIYQQGISDVQVDTRLQETVSQAVELLPELWKQAGYYPEAISAYRRAL LSQWSLENDCCARIQKAFAVFLLHSGVEATPPSLASQVEGSYVPKHNLEEAVLLLLILVRRCCLGKTKWDPSVMEHLCFALSMCSQTGVLGKELEETMPG VLHRTDRWNTLAFCYSGAGQQKAALNLLRKSLHRHERPDDLKALLLAAKICTEDSYLAAEGVEYAKRALTKAQESDEHLKSVAVHMLGLCLAKQANLCSS DFERTRLQSEALKSLEAVLALDPSNLDIVFDLSVQYAEQRYLSVALRYAKQYIDATGGSMLKGWRLLVLILSAQQRFSEAAVVTDAALDETAKWEQGPLL RLKAKLKIAQSLPAEAIETYRYLLALIQAQKKAFGAIISVSQSEDDKVNEYEVWHGLADLYSSLSQWKDAEVCLDKARELKKYSPELLHSQGKNSKLSAM HAARGEFQDAFCSYICGHMMEPNHVPGIILVASLISKNRSEAALPVARSILSDALKLEPANRKAWYHLGTVHRDDGRTADAADCFQAASMLEESDPIESF SSVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	0	1
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	2.0	0.9472
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034846 [exp]	5.6	0.9134
AT3G49650			P-loop containing nucleoside t...		Lus10019245 [exp]	6.9	0.9407
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	7.3	0.9498
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	8.5	0.9305
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	8.8	0.9027
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	9.3	0.9007
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	9.6	0.9094
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	11.8	0.9329
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10019905 [exp]	12.0	0.9286

Compare expression of checked genes

Lus10029803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.