Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43020 782 / 0 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 739 / 0 ATPAO3 polyamine oxidase 3 (.1) AT1G65840 592 / 0 ATPAO4 polyamine oxidase 4 (.1) AT4G16310 210 / 1e-58 LDL3 LSD1-like 3 (.1) AT3G13682 179 / 6e-49 LDL2 LSD1-like2 (.1) AT1G62830 177 / 4e-48 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 174 / 8e-47 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT5G13700 136 / 7e-35 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 113 / 1e-26 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020726 [exp] 957 / 0 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 739 / 0 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10001044 [exp] 469 / 7e-166 AT2G43020 439 / 2e-154 polyamine oxidase 2 (.1) Lus10033928 [exp] 217 / 3e-61 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 215 / 2e-60 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 175 / 4e-47 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 171 / 6e-46 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 163 / 4e-43 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10037885 [exp] 161 / 2e-42 AT3G13682 969 / 0.0 LSD1-like2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055300 [exp] 811 / 0 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 800 / 0 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.004G075800 [exp] 603 / 0 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 598 / 0 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G235400 [exp] 207 / 9e-58 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 206 / 1e-57 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.002G013100 [exp] 173 / 1e-46 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.008G035200 [exp] 171 / 1e-45 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 168 / 4e-45 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.010G227200 [exp] 167 / 2e-44 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10029804 pacid=23159837 polypeptide=Lus10029804 locus=Lus10029804.g ID=Lus10029804.BGIv1.0 annot-version=v1.0 ATGGCGTCTGGATTGAGGAGTAATCGCAATCAATTGAACACAGCTACTTGTCAGTCTAATGGCGGGAAGCGACAAGGAGCTTCTCCGTCAGCTATCGTGA TCGGCGGTGGTGTTGCTGGACTTGCTGCTGGTCGTGCTCTCCATGATGCCGGCTTTCAGGTTGTTTTGCTTGAATCACGGGATAGGATCGGTGGGCGAGT TCATACCGACTTCACATTTGGTTTCCCCATTGATCTGGGTGCATCATGGTTGCATGGGGTCTGCGATCAGAATCCCTTGGCACCGCTGATTGGGAGACTG GGTTTGCCGTTGTACCGAACTAGTGGTGAAAATTCTGTGTTGTATGACCATGACTTGGAGAGTTACGCGCTCTTTGACATGGAGGGTAATCAAGTTCCTC AGGCGTTGGTCACCAGGGTCGGTGAAATTTTTGATGAAATCTTAAAGGAGGCGGATAAAGTAAGAGAAGAGCATAAGGAGGACATGAACATAAAAGAGGC CTTTTCTATGGTTTCAGAAAGAAGGCCAGATTTAAGGTTGGATGGTGTTGCCTATAAGGTCCTTCAGTGGTACCTTTGCAGGATGGAAGGTTGGTTTGCC GCAGATGCTGAAACCATCTCACTTCAGTGCTGGGATCAAGAAGAATTGCTCCCAGGTGGCCACGGACTCATGGTTAGGGGTTACATTCCAGTAATTAACA CTCTTGCCAAGGGACTTGATATTCGTCTGGGGCATAGGGTAAAAAATATTGTTAGAAGTCATAATGGCGTGAAAGTGACAACAGAAAATGGGAGGACGTT TGTAGCTGATGCAGCTGTCATTGCCGTGCCTCTTGGAGTGCTGAAATCTAAGACGATAACCTTTGAACCAAAGTTACCAGATTGGAAGGAGAACGCCATT GACGACCTCGGAGTGGGAATCGAGAACAAGATCGTGTTACACTTCGACAATGTGTTCTGGCCGAATGTAGAGTTCCTAGGAGTTGTCGCAGACACCTCGT ATAGCTGCAGCTACTTCCTAAATCTCCACAAGGCTACTGGCCACCCTGTTCTAGTGTACATGCCTGCCGGGCAGCTAGCAAGAGACATTGAGAAGATGTC TGATGAAGAAGCGGCTAATTTTGCCGTCTTGCAACTTAAGAGGATCCTTCCCGATGCATCCCCTCCGATTCAACATCTTGTGTCTCATTGGGGATCCGAC ATAAACTCCCTCGGGTCCTACAGCTACGATATCGTGGGAAAACCCCATGATCTGTATGAAAGACTTAGAGTCCCGGTCGATAACCTATTCTTTGCCGGAG AGGCAACAAGCGTGAGCTTCCCCGGTTCAGTACACGGCGCATTCTCCACAGGAATGATGGCTGCTGAAGATTGCAGGATGCGGGTACTAGAGCGGTATGG AGAGATGGACTTGTTTATCCAGCCGGAAATAGCTGAGGAGATATCCATCCCGCTCCTCATCTCCCGTCTGTGA
AA sequence Show only first row Show all	>Lus10029804 pacid=23159837 polypeptide=Lus10029804 locus=Lus10029804.g ID=Lus10029804.BGIv1.0 annot-version=v1.0 MASGLRSNRNQLNTATCQSNGGKRQGASPSAIVIGGGVAGLAAGRALHDAGFQVVLLESRDRIGGRVHTDFTFGFPIDLGASWLHGVCDQNPLAPLIGRL GLPLYRTSGENSVLYDHDLESYALFDMEGNQVPQALVTRVGEIFDEILKEADKVREEHKEDMNIKEAFSMVSERRPDLRLDGVAYKVLQWYLCRMEGWFA ADAETISLQCWDQEELLPGGHGLMVRGYIPVINTLAKGLDIRLGHRVKNIVRSHNGVKVTTENGRTFVADAAVIAVPLGVLKSKTITFEPKLPDWKENAI DDLGVGIENKIVLHFDNVFWPNVEFLGVVADTSYSCSYFLNLHKATGHPVLVYMPAGQLARDIEKMSDEEAANFAVLQLKRILPDASPPIQHLVSHWGSD INSLGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSVSFPGSVHGAFSTGMMAAEDCRMRVLERYGEMDLFIQPEIAEEISIPLLISRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	0	1
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10020726 [exp]	1.0	0.9308
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	2.0	0.8974
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	3.5	0.9166
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	3.7	0.8917
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	4.2	0.8936
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	5.0	0.8952
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	6.0	0.8751
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	6.9	0.8917
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	7.3	0.9075
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	8.1	0.8748

Compare expression of checked genes

Lus10029804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.