Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59060 155 / 6e-42 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G43010 135 / 6e-35 bHLH SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2) AT1G09530 126 / 3e-31 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G20180 114 / 1e-27 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G36930 113 / 2e-27 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 99 / 1e-23 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G00050 101 / 3e-23 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46970 101 / 5e-23 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT4G28790 94 / 1e-20 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 91 / 1e-19 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020727 [exp] 584 / 0 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10022833 [exp] 139 / 2e-35 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 127 / 2e-31 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10024811 [exp] 113 / 2e-27 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038020 [exp] 101 / 8e-23 AT4G36930 105 / 1e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009261 [exp] 100 / 3e-22 AT4G36930 102 / 7e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 97 / 2e-21 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 95 / 4e-21 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041592 [exp] 92 / 7e-21 AT4G36930 106 / 3e-28 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055400 [exp] 181 / 9e-51 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G207200 [exp] 168 / 4e-46 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.002G252800 [exp] 140 / 9e-36 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.005G001800 [exp] 127 / 6e-31 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 124 / 3e-30 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G124400 [exp] 114 / 5e-28 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G139700 [exp] 114 / 2e-27 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G111400 [exp] 114 / 4e-27 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.014G025800 [exp] 106 / 2e-25 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 99 / 6e-22 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029805 pacid=23159773 polypeptide=Lus10029805 locus=Lus10029805.g ID=Lus10029805.BGIv1.0 annot-version=v1.0 ATGCAGGGGAGGAAACCATGGTGGTGCTCGTACAGAATCTTTCCCCCCTCCTTCCCCAATCCTATTCCTATCAAATCAAATACAGAGAAAGAAAGCAGAG CCATGAATCATCATCATAATCATTACCTGGCCGATTGGAGTAGCTTCGATCAGCCTGATCATCTTCTCTCTCACAAGAAATCAACTGGGGGAGATAATAA CGAGCTAGTGGAGCTGCTATGGAGAGACGGCCAGGTGGTTCTGCAAACCCAGACGCCCAAAAGAATCATCAATCAAAACGCTAATAATCCGCTGAGTGAC TTGATCCAGGACGATGAAACCGTTTCCTGGATAAACTATCCGTTTCCTGATACCGCAGCCGCCGCCGACGAAACAGAGTTCTGCTCCAACGTCCTGTCTG AATTCCCTAACTTTCCTGGCGGCGCGCCTGATCCGAACGAGGGGATTTCGAAGCAGCTGACAAATCATCAGGAAGTTGCTGGGAAGGAGTGTTCGGTTAT GACAGTTGGATCCAGCAACCGATTTCCAGCTCCTCCTACTCAGTGCTTTCCCAGCGCCGCCAAAAAGACGCCGCCTTTTTTGGAGAGGAACACGGCGGCG GCGGGTACTTCTTCCTCCGGTGGGTCTGGATCAGGGGATGGCAGTACGTTTAGCAAGATTGGTGGCAAAAGGAAGAGGTCGTTGGATTTTAATGAAGAGT CTGAGTGCCAGAGTGAGTCTGCTGAGCTGGATCGATCATCTGGGTTGAACAAGGCGGTGAAGCTATCGAAATCCGGTCGAAGGGCTCGTGCTGCTGAAGT TCATAACCTTTCAGAAAGGAGAAGAAGAGACAGAATCAACGAGAAGATGAAAGCTTTGCAAGAGCTTATCCCAAACAGCACCAAGACAGACAAGGCATCA ATGCTAGATGAGGCAATTGACTACCTGAAGTCACTCCAACTGCAACTCCAGGTAATGTGGATGGGAAATGGGATGGCAGCACAAGGAGTAATGTTTCCAG GAATGCAGCATTACATGTCCAGGTTGGGAATGGGGATGGGTCTTGGAATGGGATTAGGTATGACTGGGCACCCACTTCCTCATATCTCTGGTGGGATACC ATTGATCAATAACCACCACCAACCATCATCATCACATTCACACCAAGCTGTTATCCCTCCAACCCAATTGGTCAATAGTCATAATAACATCAGTAGTGAC CACCAGATCCAGCACCACAACAACCACATTTCTCAAGCAGCTGCAGCAGTAGCAGCACAGGCTGCTTTCTCTGACCAGTATGCGCAATTAATGGCATTTC ACCTCCAACCTACTCCCTCCTCTACTCAGGCTATGAACATGTTCAGATTTGGGTCCCAAACAGCACTGCAGCAACAGCAGCAGCAACAACAGTTTCGTCA AAATATAATGGCACCACCACCTCCTCCACCAGGAACTTCAAGTACTGGTGGACCTTCAACCCAAATCATAGCTTCACAAAAGTAG
AA sequence Show only first row Show all	>Lus10029805 pacid=23159773 polypeptide=Lus10029805 locus=Lus10029805.g ID=Lus10029805.BGIv1.0 annot-version=v1.0 MQGRKPWWCSYRIFPPSFPNPIPIKSNTEKESRAMNHHHNHYLADWSSFDQPDHLLSHKKSTGGDNNELVELLWRDGQVVLQTQTPKRIINQNANNPLSD LIQDDETVSWINYPFPDTAAAADETEFCSNVLSEFPNFPGGAPDPNEGISKQLTNHQEVAGKECSVMTVGSSNRFPAPPTQCFPSAAKKTPPFLERNTAA AGTSSSGGSGSGDGSTFSKIGGKRKRSLDFNEESECQSESAELDRSSGLNKAVKLSKSGRRARAAEVHNLSERRRRDRINEKMKALQELIPNSTKTDKAS MLDEAIDYLKSLQLQLQVMWMGNGMAAQGVMFPGMQHYMSRLGMGMGLGMGLGMTGHPLPHISGGIPLINNHHQPSSSHSHQAVIPPTQLVNSHNNISSD HQIQHHNNHISQAAAAVAAQAAFSDQYAQLMAFHLQPTPSSTQAMNMFRFGSQTALQQQQQQQQFRQNIMAPPPPPPGTSSTGGPSTQIIASQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	0	1
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	2.4	0.8614
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	2.8	0.8213
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	3.5	0.8216
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	7.5	0.7809
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	9.5	0.8165
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	10.8	0.8267
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	11.6	0.8015
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	12.4	0.8027
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	13.8	0.8046
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	14.5	0.8122

Compare expression of checked genes

Lus10029805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.