Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30800 1175 / 0 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 1112 / 0 NIH nuclear DEIH-boxhelicase (.1) AT2G35920 334 / 6e-98 RNA helicase family protein (.1) AT2G01130 301 / 2e-85 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 291 / 9e-82 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 283 / 5e-79 DEA(D/H)-box RNA helicase family protein (.1) AT1G58060 278 / 1e-76 RNA helicase family protein (.1) AT1G58050 262 / 1e-71 RNA helicase family protein (.1) AT5G13010 181 / 5e-46 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G26560 180 / 6e-46 ATP-dependent RNA helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020727 [exp] 2058 / 0 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10001415 [exp] 1373 / 0 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10009012 [exp] 320 / 2e-91 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 314 / 1e-90 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009643 [exp] 315 / 3e-90 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10001049 [exp] 289 / 3e-89 AT2G30800 244 / 1e-73 helicase in vascular tissue and tapetum (.1) Lus10013479 [exp] 311 / 1e-88 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 308 / 1e-87 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 286 / 5e-80 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206500 [exp] 1316 / 0 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.016G068900 [exp] 330 / 4e-96 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G117800 [exp] 329 / 1e-94 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 317 / 1e-90 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 316 / 3e-90 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.008G014100 [exp] 292 / 4e-82 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 250 / 1e-67 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 173 / 2e-44 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 173 / 1e-43 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.015G024400 [exp] 171 / 7e-43 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF01424 [flax] [poplar] R3H R3H domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10029806 pacid=23159701 polypeptide=Lus10029806 locus=Lus10029806.g ID=Lus10029806.BGIv1.0 annot-version=v1.0 ATGGCGAGGATGAAGGGGCAGAAGGGGCAGAAAGGCAAGAGTCTATGGGGTAAAGTAAACCACGTTCCTAAGGAAAATCGTGCTCATATTCATGAACTTC TCCGAACGTTTCAAGCTTCAGACGAACCAGTATTTGCCGCATTAAGTTTTGCTAGGATGCTTCTTGCAGTTCTCACATTTGAAGCTAGCCAATCAAAACT AGACCGTGCTCTGGTGCATTTACTTTGTACCAAAATGGGAATGAAATCCAAAAGTAAGGGGAGTGGAAACCAACGATGTGTTTCTGTTTTTAAGACTCCT GGGAAGGAACCTAAAAACAAGAGTACTGGGAAGCACCAGAAAAAGGAAAAAAGCAACGAGAATTTAAGCTGTTTGACTCTTTCAGAACAGTCACAGATGA TCTTACAGGATTTGTTTTCACGTTACCCTCCTGAAGATGAAGACCTTGGTACCAGGTTGGCTCAGAAGAATAGGAGTAAAGCTGGCCAAAAAAGGGGTGA TTCTATGTTCTCTTCGCCTTTGATAAGCAAAGAGGATATAAAGAAGAAGGTGGAGTTGCTCAGTTCGAAATTGAAAAAGGATGCACGTTTCAGAAAGACT TTTGAAGCAAGGTCTAAGCTTCCTATTGCAGCGTTCTCTGAAGTCATTAGATCCACTGTTGATTCTAATCAGGTTGTCCTCATATCTGGTGAGACTGGTT GTGGGAAAACCACACAGGTCCCACAAATGTTGTTGGATTATCTGTGGAGCAAAGGTGAGGTAGGAAAAATAGTTTGCACCCAACCTCGGCGTATCTCCGC AATGTCAGTTGCTGATAGAATTTCTCAAGAAAGGGGACAAACAACTGGAGATGATGTTGGATATAAGGCAAGCATCAAATATCATATTCGGTTGGAAAGT AAGGGTAGCAGGAACTCTTCAATTGTGTTTTGCACAAATGGGATTTTACTTAGGGTGCTTGTTTCTGGTGGTACAAGCCTATCCGGTCCTTCCAGCAAAC GAGGTGAAGAACTGAGTGGGATAACTCACATTATAGTGGATGAAATCCATGAGAGGGATCGTCATTCAGATTTCATGTTGACAGTAATCAGGGACTTGCT TCCTCTGTATCCTCACCTTCGACTGATTCTGATGAGTGCTACCCTTGATGCGGAGAGATTTGCTCAGTATTTTGGTGGCTGCCCAATTATACGTGTCCCT GGTTTCACTTTTCCTGTTACAGCCTTCTATTTGGAGGATGCTCTTTCTATTCTAAAATCTTCAAATGGCAATCATCCTGATTTGCAAGATCCCCCAAATG ACCTGAACAAGGAAGAGGAAGCTGCTTTAGATGAAGCTATTCATTTGGCATGGTCTAATGATGAGTTTGATCTTCTCATGGACTTGGTATCCTCTGGAGG GAGCCCAAATGTTTATAATTATCAGCATTCTTCAACAGGGTTAACCCCATTGATGGTCTTTGCTGGAAAGGGTAGAGTGGGGGATGTTTGCATGCTCCTC TCTGTAGGTGCTAACCACGGTTTGAAGAACAAAGTTGGCATGACAGCTTTGGCATTGGCAGAAAGAGAAAACCAGCAAGAAGTTGCTGGAGTACTAAAAG GTCATATCTGCAGCGCCCTGTGTGACCCTTCAGAACACCAAGCTTTGCTTGATAAATATCTAGCAGAAGTCGATCCTGATCTTATCGATGTCATGCTTAT AGAGCGTTTATTGAAGAGGATATGTCAGGACTCTAGAGATGGTGCTATAATCGTCTTCCTACCAGGATGGGATGATATAAATAAGATCCGGAAGAGATTA CTGGAAAACTCCTTCTTTAAAGATCCTTCCAAGTTTCTGATAATTTCTCTTCATTCGATGGTTCCACCAGCCGAGCAAAAGAAGGTTTTCGATCGTCCCC GTCTAGGTTGCCGTAAGATAGTCCTTTCAACTAATATAGCAGAAAGTTCCATCACTATTGATGATGTTGTCTACGTCATAGACAGTGGTCGAATGAAAGA GAAAAGCTATGATCCCTTCAGTAATGTCTCTACTCTTCAAACTTCATGGATATCAAAGGCAAGTGCAAAACAAAGGGAGGGACGTGCAGGTCGCTGTCAG CCTGGGATATGTTACCATCTTTTTTCGAAATTTCGAGCTGCTTCCTTACCTGATTTCCAAGTCCCGGAAATTAGGAGAATACCAATTGATGAACTTTGCC TGCAGGTGAAGTTGCTGGATCCGAGTTGCAAGATAGAATCTTTTTTGCTGAAGACGATGGATCCTCCCTACCCTGAATCCATAGCTAATGCCATCGGGGC TCTTGAAGAGCTTGGTGCTTTGTCACCCGGTGAACAGTTGACAGAACTAGGAAAAACGCTCGGTCGTTTACCTGTTCATCCTTTAATCAGCAAGATGCTC TTATTTGGCGTCTTGATGAACTGTCTTGATCCTGCATTAACCATAGCGTGTGCCGCTGATTACAGATCTCCATTTATGCTTCCCATATCTCCGGACGAGA AAAAGAAAGCAAATGACCGTAAATTTGAACTTGGTTCGGTATATGGCGGCTTCAGTGATCAGCTCGCGGTAGTAGCAGCGTTTGACTGCTGGCGAAAGGC CAAAGACAAAGGTAAAGCCTCCGTTTTTTGTTCTGATTACCACTTATCTGTTGGCACCATGAAAATGCTTTCCAGTATGCGTAAGCAGCTCCACGAGGAG CTTATTCGTCACGGTCTTGTACCGGAAGATGTCTCGACCTGTAACGGTAACGCATGTGATCCCGGCATAATCGCTGCTGTTCTTGTGGCTAGCATGTATC CCAATGTCGGAAAAGTCTTGCCGCCTAAAGACGATAAACGCGGGGTAATACAGACGGCTGATGGTGCGAAAGTCCGGTTGAATAATTTTTCCCTTTGTGG GAAATTGATGTCTACTAAGTATGATGTCTGCCCTCTTGTCGTTTATGATGAGGTAACTCGCGGAGATATGGGTATGCGTATAATGAGCTGTACTGTTGTT GGCCCGGTCCCGCTGGTACTTCTTGCTACAGAGATAGCAGTTGCTACTGCAAATGATGATAATACTGATGGTGATAATAAAAACGGAAAGAATGATGCTG ACAACAAAACTGATGATGATGGGATGGAAATCGATGATCTTAATGGTCAGAAAATCATGTCCGCCCCTGATAATCCCGTAACTATTGTTATGGATAGATG GCTTCATTTGAAATCGAAAGCGATCGATGTTGCTCAGATTTACTGCTTGAAAGAGCGGTTATCTGCTGCAATCATATTCAAAGTAAGTAATCCCCGAAAG TCCCTTCCACCTGCTCTTGAAGCCTCGATGCAAGCAATAGCTCGTGTTCTCTCTTGCGATGGGCTGTCCGGGATGCCCTTGCTGAACCCTGATATTTCGA AGGTTAAGACGAAGAAGGGAAATGATAATGCCGAGGAAAGAGTATCAAAACATCGATATCTATGA
AA sequence Show only first row Show all	>Lus10029806 pacid=23159701 polypeptide=Lus10029806 locus=Lus10029806.g ID=Lus10029806.BGIv1.0 annot-version=v1.0 MARMKGQKGQKGKSLWGKVNHVPKENRAHIHELLRTFQASDEPVFAALSFARMLLAVLTFEASQSKLDRALVHLLCTKMGMKSKSKGSGNQRCVSVFKTP GKEPKNKSTGKHQKKEKSNENLSCLTLSEQSQMILQDLFSRYPPEDEDLGTRLAQKNRSKAGQKRGDSMFSSPLISKEDIKKKVELLSSKLKKDARFRKT FEARSKLPIAAFSEVIRSTVDSNQVVLISGETGCGKTTQVPQMLLDYLWSKGEVGKIVCTQPRRISAMSVADRISQERGQTTGDDVGYKASIKYHIRLES KGSRNSSIVFCTNGILLRVLVSGGTSLSGPSSKRGEELSGITHIIVDEIHERDRHSDFMLTVIRDLLPLYPHLRLILMSATLDAERFAQYFGGCPIIRVP GFTFPVTAFYLEDALSILKSSNGNHPDLQDPPNDLNKEEEAALDEAIHLAWSNDEFDLLMDLVSSGGSPNVYNYQHSSTGLTPLMVFAGKGRVGDVCMLL SVGANHGLKNKVGMTALALAERENQQEVAGVLKGHICSALCDPSEHQALLDKYLAEVDPDLIDVMLIERLLKRICQDSRDGAIIVFLPGWDDINKIRKRL LENSFFKDPSKFLIISLHSMVPPAEQKKVFDRPRLGCRKIVLSTNIAESSITIDDVVYVIDSGRMKEKSYDPFSNVSTLQTSWISKASAKQREGRAGRCQ PGICYHLFSKFRAASLPDFQVPEIRRIPIDELCLQVKLLDPSCKIESFLLKTMDPPYPESIANAIGALEELGALSPGEQLTELGKTLGRLPVHPLISKML LFGVLMNCLDPALTIACAADYRSPFMLPISPDEKKKANDRKFELGSVYGGFSDQLAVVAAFDCWRKAKDKGKASVFCSDYHLSVGTMKMLSSMRKQLHEE LIRHGLVPEDVSTCNGNACDPGIIAAVLVASMYPNVGKVLPPKDDKRGVIQTADGAKVRLNNFSLCGKLMSTKYDVCPLVVYDEVTRGDMGMRIMSCTVV GPVPLVLLATEIAVATANDDNTDGDNKNGKNDADNKTDDDGMEIDDLNGQKIMSAPDNPVTIVMDRWLHLKSKAIDVAQIYCLKERLSAAIIFKVSNPRK SLPPALEASMQAIARVLSCDGLSGMPLLNPDISKVKTKKGNDNAEERVSKHRYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	0	1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	2.0	0.9293
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	5.0	0.9065
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	5.7	0.9217
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	6.0	0.8909
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	9.2	0.8913
AT1G79150			binding (.1)		Lus10029032 [exp]	9.6	0.9187
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	14.1	0.9042
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	14.9	0.8984
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	15.0	0.9009
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	17.7	0.8687

Compare expression of checked genes

Lus10029806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.