Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020728 [exp] 240 / 2e-81 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029807 pacid=23159740 polypeptide=Lus10029807 locus=Lus10029807.g ID=Lus10029807.BGIv1.0 annot-version=v1.0 ATGGTTGAACTAATATGGATGGTTTGGCAGATGTACAGAAACATGAACAATTTTCCACCAAAAGTAGCACTACTTGGGCCGGCTTCACAAAGAGAAGGCC AAGCTGATGACGACACACCGAGACGATTCGAAGTAGACGATCATCATAAGTATGAATCCAGCAGCAGACATCGGACTTTATCGATCATCTCCGATGATGA CGACAATGGAACCAACAGCAGCAGTACTACCATAATCAGATCATCACTACTCGAACAAGTCGTCGGCAGTAAATCGTTACAAGCACAGGGTCCAACGCGA AATTATGTCGGAAGATCAAATGGTGAAGGAAGAAGTAGCAATGATCATCAAGATGAACCCAACTGTGATCTCTCGCTCCGCTTTAAGACGACATCGGAGA ATATGCAACTCGGAAAAGAAGATAATCGGAGTTGCATGGGTTTAATTAGTGGTTACGACGGTAAATTTCGAGAAGTGTCACAGAACATGAACTATGTGAA CAATAAAAGGTTTTATGAGTTCTTGTCTCTTGGGACAGATAGCCACATTAACCTGGATTTGACCATCTAG
AA sequence Show only first row Show all	>Lus10029807 pacid=23159740 polypeptide=Lus10029807 locus=Lus10029807.g ID=Lus10029807.BGIv1.0 annot-version=v1.0 MVELIWMVWQMYRNMNNFPPKVALLGPASQREGQADDDTPRRFEVDDHHKYESSSRHRTLSIISDDDDNGTNSSSTTIIRSSLLEQVVGSKSLQAQGPTR NYVGRSNGEGRSSNDHQDEPNCDLSLRFKTTSENMQLGKEDNRSCMGLISGYDGKFREVSQNMNYVNNKRFYEFLSLGTDSHINLDLTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029807 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	3.5	0.8650
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10029429 [exp]	26.0	0.8610
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	37.8	0.7694
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	38.2	0.8572
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	41.9	0.8428
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	63.5	0.8397
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	81.8	0.7820
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	82.2	0.7912
AT3G09110			Protein of unknown function (D...		Lus10003166 [exp]	86.6	0.8022
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	87.9	0.8233

Compare expression of checked genes

Lus10029807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.