Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 486 / 2e-170 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020729 [exp] 556 / 0 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10001416 [exp] 536 / 0 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10001050 [exp] 515 / 0 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10039186 [exp] 390 / 9e-133 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10013753 [exp] 389 / 2e-132 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 69 / 9e-15 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205800 [exp] 521 / 0 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 513 / 0 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 491 / 4e-172 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700 [exp] 405 / 4e-139 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 399 / 6e-137 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 377 / 3e-128 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 254 / 3e-83 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081433 [exp] 50 / 7e-07 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10029809 pacid=23159763 polypeptide=Lus10029809 locus=Lus10029809.g ID=Lus10029809.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGCGCCCTCCTCGGTTCCATACCTACAATCAGCTCCCGCGGTGGAGGAGCAGGAGGAGGCGGAGCTACCCAGTTCGGAATCAGGCCTGGGG GAGGCGGAAATCGGAAGATGAGAATTGCTGCATCGAAGTCCAAATCGAAATCGAGTCATAGTGTGTCTGCTGTGTACTCGGGCGCCGCAGCCGTCGGCGG TACTGGGGAGGGGGGGGCGGGCGGGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNTGAGGGGGAGGAGGCGGCGGGGGGGGAAGAAGAAGCAGTGGCGGGAACGGAAGCGAATTGGGATCTGCTGAATGACGCTTACG ATAGGTGCGGTGAGGTCTGCGCTGAGTATGCCAAGACTTTTTACTTGGAACAGATGTATATATTTTCCGCTTTATCTGAATTGCTTCGCTGTTGGTCTCC AAAAAGAGTCGAACTTTTCTCCCTTTTTGAGTATATTTTATTCATGGCGTCTTGCATAAGAACAACCGTCTTAGATCAGAGATTCCATCTTTTTCCGCTG GTTCTGAAATCTGAATCTGCTAGAGTAAATGGAAAGAAGAAGAAAGCTGTATGGGCGATTTATGTTTGGTGCAGAAGGACTGACGAGCTTGTAGACGGGC CAAACGCAACTCACATCACACCCAAAGCGCTTGATAGATGGGAGACGAGACTGAATGACCTTTTCGAAGGCCGTCCATATGACATGTTTGATGCTGCTCT GTCCGATACAGTCGCGAAGTACCCTGTCGATATCCAGCCTTTCAAGGACATGATAGAAGGAATGAGGATGGATTTACGAAAGACGCGATACAACAACTTT GATGAGCTCTACCTATACTGCTACTATGTTGCCGGCACAGTTGGTCTAATGAGTGTTCCGGTAATGGGAATCGACCCTGAATCGAAAGCTTCAACCGAGA GCGTCTACAATGCTGCATTGGCATTGGGGATCGCCAACCAACTCACCAACATACTCAGAGATGTTGGAGAAGATGCGAGGAGAGGAAGGATATATCTGCC GCAGGACGAGCTGAGGAAAGCCGGGCTATCAGACGAAGACATATTCAAAGGGAAAGTGACTGACAAGTGGAGGAGCTTCATGAAAGGGCAGATAAAGAGG GCGAGGATGTTCTTCGACGAGGCGGAGAAAGGTGTCGGAGAACTGAACGGGGCGAGCAGATGGCCGGTGTGGGCGTCTCTGCTGCTGTATAAGCAGATAC TGGACGCCATTGAAGCGAACGACTATGATAACTTCACAAAGAGAGCTTATGTTGGGAAAGCGAAGAAGTTTGCTTCTTTGCCTGTAGCTTACGGGAAGGC ACTCATTGGTCCTTCGAAAAGAGCTGAATTTGCTCGGACTAACTAG
AA sequence Show only first row Show all	>Lus10029809 pacid=23159763 polypeptide=Lus10029809 locus=Lus10029809.g ID=Lus10029809.BGIv1.0 annot-version=v1.0 MAAGALLGSIPTISSRGGGAGGGGATQFGIRPGGGGNRKMRIAASKSKSKSSHSVSAVYSGAAAVGGTGEGGAGGSXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXEGEEAAGGEEEAVAGTEANWDLLNDAYDRCGEVCAEYAKTFYLEQMYIFSALSELLRCWSPKRVELFSLFEYILFMASCIRTTVLDQRFHLFPL VLKSESARVNGKKKKAVWAIYVWCRRTDELVDGPNATHITPKALDRWETRLNDLFEGRPYDMFDAALSDTVAKYPVDIQPFKDMIEGMRMDLRKTRYNNF DELYLYCYYVAGTVGLMSVPVMGIDPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELRKAGLSDEDIFKGKVTDKWRSFMKGQIKR ARMFFDEAEKGVGELNGASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKFASLPVAYGKALIGPSKRAEFARTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	1.0	0.9485
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	1.4	0.9400
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	2.0	0.9006
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	3.2	0.8815
AT1G16080			unknown protein		Lus10024094 [exp]	4.9	0.9113
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	5.7	0.8863
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	5.9	0.8972
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	6.9	0.8757
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	7.3	0.8854
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	10.4	0.8706

Compare expression of checked genes

Lus10029809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.