Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 174 / 3e-54 SAG12 senescence-associated gene 12 (.1) AT5G50260 172 / 1e-53 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 172 / 2e-53 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G43060 167 / 2e-50 Granulin repeat cysteine protease family protein (.1) AT3G19390 162 / 6e-49 Granulin repeat cysteine protease family protein (.1) AT3G48350 160 / 1e-48 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT1G06260 156 / 1e-47 Cysteine proteinases superfamily protein (.1) AT1G47128 156 / 2e-46 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT1G20850 153 / 5e-46 XCP2 xylem cysteine peptidase 2 (.1) AT1G09850 154 / 1e-45 XBCP3 xylem bark cysteine peptidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020730 [exp] 270 / 7e-92 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020722 [exp] 256 / 1e-86 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 255 / 5e-86 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028502 [exp] 255 / 6e-86 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10029799 [exp] 254 / 7e-86 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10042295 [exp] 254 / 8e-86 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10032406 [exp] 253 / 2e-85 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10004781 [exp] 251 / 2e-85 AT5G45890 227 / 7e-73 senescence-associated gene 12 (.1) Lus10020723 [exp] 252 / 6e-85 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089100 [exp] 214 / 4e-70 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 213 / 1e-69 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 213 / 2e-69 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 213 / 2e-69 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 213 / 3e-69 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 213 / 3e-69 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 203 / 3e-66 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 201 / 7e-65 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 199 / 4e-64 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 197 / 2e-63 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10029812 pacid=23159799 polypeptide=Lus10029812 locus=Lus10029812.g ID=Lus10029812.BGIv1.0 annot-version=v1.0 ATGGATGATGCTTTCAAGTTCGTTATTCAAAACAAGGGATTGACCACCGAGACCAACTACCCTTATGACGCTGCTGATGGAACCTGCAATGCTAACAAAG AAAGCCGCAGTGCAGCCAACAACGAGGCCGCATTGATGAAGGCTGTGGCGAGCCAACCGATATCAGTTGCAATTGATGCAGGGGATTCGTCATTCCAATC CTACTCTAGTGGAATTTTCACAGGAGAATGTGGGAGCGAGCTAGACCATGGAGCGACGGCAATTGGGTATGGAGAGAGCGGTGGGAAGAAGTACTGGTTG GTGAAGAACTCATGGGGAGCACTGTGGGGAAAAGCCGGATACACTCGTATGCAGAAAGATGTTACCACTAAAGAAGGTCTGTGCGGAATTGCCAGGCAAG CTTCCTATCCTACTGATTCCCACTGCCCAAGTGAAAAGATATAG
AA sequence Show only first row Show all	>Lus10029812 pacid=23159799 polypeptide=Lus10029812 locus=Lus10029812.g ID=Lus10029812.BGIv1.0 annot-version=v1.0 MDDAFKFVIQNKGLTTETNYPYDAADGTCNANKESRSAANNEAALMKAVASQPISVAIDAGDSSFQSYSSGIFTGECGSELDHGATAIGYGESGGKKYWL VKNSWGALWGKAGYTRMQKDVTTKEGLCGIARQASYPTDSHCPSEKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029812 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10026707 [exp]	1.4	0.8086
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10033877 [exp]	2.4	0.7249
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	8.9	0.6754
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	13.9	0.6805
					Lus10010117 [exp]	14.5	0.6639
					Lus10002152 [exp]	15.5	0.6639
					Lus10005187 [exp]	16.4	0.6639
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	17.3	0.6639
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	18.2	0.6639
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	19.0	0.6639

Compare expression of checked genes

Lus10029812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.