Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 145 / 1e-42 SAG12 senescence-associated gene 12 (.1) AT3G19390 142 / 1e-40 Granulin repeat cysteine protease family protein (.1) AT2G27420 138 / 1e-39 Cysteine proteinases superfamily protein (.1) AT3G49340 138 / 1e-39 Cysteine proteinases superfamily protein (.1) AT4G35350 135 / 5e-39 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G29090 136 / 7e-39 Cysteine proteinases superfamily protein (.1) AT3G19400 133 / 2e-38 Cysteine proteinases superfamily protein (.1.2) AT1G29080 129 / 2e-36 Papain family cysteine protease (.1) AT2G34080 129 / 2e-36 Cysteine proteinases superfamily protein (.1) AT3G43960 129 / 4e-36 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020734 [exp] 318 / 5e-110 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 309 / 2e-106 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 308 / 3e-106 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 308 / 8e-106 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 301 / 2e-103 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10032406 [exp] 301 / 2e-103 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 300 / 8e-103 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 298 / 7e-102 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10020723 [exp] 296 / 2e-101 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 230 / 2e-75 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 229 / 3e-75 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 228 / 1e-74 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 228 / 3e-74 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 228 / 3e-74 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 224 / 2e-73 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 209 / 7e-68 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 199 / 3e-63 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 187 / 6e-59 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 182 / 2e-57 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10029814 pacid=23159646 polypeptide=Lus10029814 locus=Lus10029814.g ID=Lus10029814.BGIv1.0 annot-version=v1.0 ATGGGGCCCTTGAACAAAAATTTCATTCTCTTGGCTTCCATATTCATCCTGGGAGCTCTGGCTTCTCACACCACGGCACGCTATACCCTTTCTGAAGCTG CCATGCGAGTCAGGTATGAGCAATGGATGACTCGTTATGGCATAGTCTACAACAGTGCCACTGAAAAGGAGGCTCGATTCCTGATCTTCAAAGACAACGT AGCTTTCATTGACTCTTCCAATGCTGCTGGAAATAAGACTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTTACTAAGGACGAATTCAAAGCCTCTAGA AACGGGTTCAAAGGACACATGTGCTCTCCCCAACATGGAACTTTTAGGTACGACAATGTGAGTTCGGTCCCAACGACCATGGACTGGAGGAAGAAGGGAG CAGTCACTCCTATCAAAGACCAGGGTCAGTGCGGAAGCTGTTGGGCATTTTCGGCCGTGGGAGCCATGGAAGGAATCCACCAGCTCAGTACGGGAAAGTT TGGTCGTCTCTTTCGGAGCAAGAATTGGTCGACTGCGACACCAAGGGAGAGGACCAAGGATGCAACAGCGGGTTGA
AA sequence Show only first row Show all	>Lus10029814 pacid=23159646 polypeptide=Lus10029814 locus=Lus10029814.g ID=Lus10029814.BGIv1.0 annot-version=v1.0 MGPLNKNFILLASIFILGALASHTTARYTLSEAAMRVRYEQWMTRYGIVYNSATEKEARFLIFKDNVAFIDSSNAAGNKTYKLGVNQFADFTKDEFKASR NGFKGHMCSPQHGTFRYDNVSSVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKFGRLFRSKNWSTATPRERTKDATAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029814 [exp]	0	1
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	15.7	0.7834
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10037711 [exp]	25.5	0.7155
AT5G19640			Major facilitator superfamily ...		Lus10039204 [exp]	29.7	0.7601
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10020664 [exp]	53.0	0.7305
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	55.3	0.7271
AT2G41945			unknown protein		Lus10029305 [exp]	55.3	0.6950
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10000651 [exp]	57.5	0.7540
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	66.0	0.7533
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	72.7	0.7475
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10021024 [exp]	99.2	0.7308

Compare expression of checked genes

Lus10029814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.