Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30860 308 / 1e-107 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 287 / 2e-99 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G03190 192 / 6e-62 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT5G17220 184 / 5e-59 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 184 / 9e-59 ATGSTF13 Glutathione S-transferase family protein (.1) AT2G47730 166 / 3e-51 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT4G02520 160 / 2e-49 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G02930 160 / 2e-49 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G02930 155 / 2e-47 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 151 / 7e-46 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020736 [exp] 390 / 3e-140 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 366 / 1e-130 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 363 / 1e-129 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 327 / 4e-115 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 232 / 1e-77 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10004151 [exp] 204 / 1e-66 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10023511 [exp] 201 / 3e-65 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10005634 [exp] 180 / 6e-57 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10001053 [exp] 160 / 8e-51 AT2G30860 152 / 8e-48 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138800 [exp] 244 / 2e-82 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015200 [exp] 204 / 1e-66 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015100 [exp] 191 / 9e-62 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 191 / 1e-61 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 185 / 3e-59 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207093 [exp] 161 / 7e-50 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 159 / 5e-49 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 157 / 4e-48 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.004G232600 [exp] 77 / 3e-17 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.005G182000 [exp] 72 / 3e-15 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029816 pacid=23159877 polypeptide=Lus10029816 locus=Lus10029816.g ID=Lus10029816.BGIv1.0 annot-version=v1.0 ATGGTGGTGAAGTTGTACGGTCCAGCTTACGCTTCTTCGAAGCGAGTACTCGTCTGCCTCGTTGAGAAGGGCACCGAGTTCGAGACCGTCCCCGTTGATC TCGTGAAGGGAGAGCACAAGCTTCCCGGCTACCTCAAGCTTCAGCCATTTGGAGCTCTGCCCGTGATTCAAGACGGGGACTACATTCTCTATGAGTCGAG AGCGATCATAAGGTACTATTCGGAGAAGTACAGGTCTCAGGGGACTGATCTGCTGGGGAAGACAATAGAAGAAAGAGGACTGGTGGAGCAATGGCTTGAA GCCGAGGCACAGAACTACGACCCACATATGTTCAACCTGGCCCGTCACGTCCTGTTCGCATCAGCTCTGCAATTCGAACCTGACGAGAAGGTGATAAAGG AGAGCGAGGAGAAGATCGCGAAAGTGCTGGACATCTACGAAGAGAGGCTGTCGAAGAGCAAGTACCTGGCTGGAGATTTCTTCAGCTTGGCTGATCTCAG CCACCACCCCTTCACTGAGTATCTTGTGGGTCCGATCGGGAAGGAGTACATGATCAAGAGCAGGAAGCATGTTAGTGCTTGGTGGGATGATATCAGCAGC AGGCCTTCTTCTTGGAAGAAAGTTCTTGAGCTTTGA
AA sequence Show only first row Show all	>Lus10029816 pacid=23159877 polypeptide=Lus10029816 locus=Lus10029816.g ID=Lus10029816.BGIv1.0 annot-version=v1.0 MVVKLYGPAYASSKRVLVCLVEKGTEFETVPVDLVKGEHKLPGYLKLQPFGALPVIQDGDYILYESRAIIRYYSEKYRSQGTDLLGKTIEERGLVEQWLE AEAQNYDPHMFNLARHVLFASALQFEPDEKVIKESEEKIAKVLDIYEERLSKSKYLAGDFFSLADLSHHPFTEYLVGPIGKEYMIKSRKHVSAWWDDISS RPSSWKKVLEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	0	1
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	1.0	0.9566
AT5G47090			unknown protein		Lus10021704 [exp]	1.4	0.9256
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	4.0	0.9079
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	4.9	0.9038
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	5.3	0.8860
AT1G53200			unknown protein		Lus10005971 [exp]	5.7	0.8983
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	7.7	0.8937
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	8.1	0.8895
AT2G37240			Thioredoxin superfamily protei...		Lus10030582 [exp]	8.8	0.8554
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	9.2	0.9018

Compare expression of checked genes

Lus10029816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.