Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17290 415 / 2e-145 ATG5, APG5, ATATG5 AUTOPHAGY 5, autophagy protein Apg5 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020737 [exp] 634 / 0 AT5G17290 466 / 8e-166 AUTOPHAGY 5, autophagy protein Apg5 family (.1) Lus10017221 [exp] 71 / 6e-13 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139700 [exp] 458 / 3e-162 AT5G17290 406 / 2e-142 AUTOPHAGY 5, autophagy protein Apg5 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF04106 [flax] [poplar] APG5 Autophagy protein Apg5
Representative CDS sequence Show only first row Show all	>Lus10029817 pacid=23159859 polypeptide=Lus10029817 locus=Lus10029817.g ID=Lus10029817.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCGCAGAAGTACGTATGGATGGGAGCGATACCTCTGCAGATTCATCTCCACGAATCCGAAGTCACGACAGTGCCGCCACCACCGCCTGCCC TGATCTTAGCTCCTCGAATCGGCTACTTGCCTTTGCTCCTCCATCTCATCAAGCCTCACTTCTCTTCCACTCTCCCTCCAGGAGTCGACACCGTCTGGTT CGAGTACAAAGGATTGCCTCTCAAATGGTATATTCCCACTGGAGTTCTGTTTGACCTTCTCTGTGCTGAACCTGAAAGACCTTGGGATTTAACGATTCAT TTCAGAGGATATCCTAGTCATTTATTGATTCCTTGTGATGGTGAAGACTCTGTGAAGTGGAACTTCATCAACTCATTGAAAGAGGCAGATTATATAATTA ATGGTAATTGCAAGAATGTTATGCACATGTCTCAGTCTGATCAGACGGACCTCTGGAACTCTGTAGTTAATGCCAATATGGAAGCATTCATTCGATCAAC ATCAAAACTGAAAATTGGAACGATTGAGGATGAGTTTGCAGCCAAGTTTAGTTCGTCCTCACAAAAATCTCAAAAGCTAACTGGTGAGGTAGATCCAGTT GCACAGACAAAGCCAGGTAAAGTTCCTGTTCGGTTATATATCTGGAGTGTAAGCAAGGATTTTGAAGACTTGGAAGATGCACCTCCGATCGATAGTTGGG ACGGCATTTCTTATATCAACAGGCCAGTTGAGATCCACAAAGAAGAAGGTAAATGCTTCACCTTACACGATGCAATTAAAACCCTCCTGCCAGAACTTTT TGGCAAGAACTCATCGCTGAACGAAGAAAAACGTTCCGAAGAAGCTGAACAAATCATCCTCCCGGAAGAAGATACCGATAGCAATCGAATTGCTGAGCAA GGGGAAGGAACAGTAAGCAAGCCATTGGAGACTGTTAGCGCAGCGGCCAATGCTGAAATCAAGCTCATCCGGATTCAAGGTATTGAACCCAAACTGGAAG TACCATTTTCTTGGGTTGCAAACCAGTTAAAGCATCCTGAACAGTTTCTTCACGTCTGCGTGTATGTCAGAGTTCCTCCCACAAATTCTGTGTAA
AA sequence Show only first row Show all	>Lus10029817 pacid=23159859 polypeptide=Lus10029817 locus=Lus10029817.g ID=Lus10029817.BGIv1.0 annot-version=v1.0 MEEAQKYVWMGAIPLQIHLHESEVTTVPPPPPALILAPRIGYLPLLLHLIKPHFSSTLPPGVDTVWFEYKGLPLKWYIPTGVLFDLLCAEPERPWDLTIH FRGYPSHLLIPCDGEDSVKWNFINSLKEADYIINGNCKNVMHMSQSDQTDLWNSVVNANMEAFIRSTSKLKIGTIEDEFAAKFSSSSQKSQKLTGEVDPV AQTKPGKVPVRLYIWSVSKDFEDLEDAPPIDSWDGISYINRPVEIHKEEGKCFTLHDAIKTLLPELFGKNSSLNEEKRSEEAEQIILPEEDTDSNRIAEQ GEGTVSKPLETVSAAANAEIKLIRIQGIEPKLEVPFSWVANQLKHPEQFLHVCVYVRVPPTNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	0	1
					Lus10009515 [exp]	1.4	0.9169
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	2.0	0.8896
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	2.2	0.8844
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	5.2	0.8898
AT5G55060			unknown protein		Lus10021546 [exp]	5.5	0.8967
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	6.5	0.8609
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	7.4	0.8648
AT1G01770			unknown protein		Lus10036349 [exp]	8.2	0.8582
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	10.6	0.8587
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	10.6	0.8747

Compare expression of checked genes

Lus10029817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.